Result of FASTA (ccds) for
pFN21AE5059
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5059, 307 aa
1>>>pF1KE5059 307 - 307 aa - 307 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1326+/-0.000881; mu= 7.0877+/- 0.053
mean_var=328.0145+/-68.014, 0's: 0 Z-trim(117.5): 809 B-trim: 0 in 0/52
Lambda= 0.070815
statistics sampled from 17281 (18219) to 17281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.56), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS13006.1 SCRT2 gene_id:85508|Hs108|chr20 ( 307) 2199 237.4 1.1e-62
CCDS6421.1 SCRT1 gene_id:83482|Hs108|chr8 ( 348) 1069 122.0 6.5e-28
CCDS6146.1 SNAI2 gene_id:6591|Hs108|chr8 ( 268) 605 74.4 1e-13
CCDS32505.1 SNAI3 gene_id:333929|Hs108|chr16 ( 292) 578 71.7 7.4e-13
CCDS13423.1 SNAI1 gene_id:6615|Hs108|chr20 ( 264) 519 65.6 4.6e-11
>>CCDS13006.1 SCRT2 gene_id:85508|Hs108|chr20 (307 aa)
initn: 2199 init1: 2199 opt: 2199 Z-score: 1239.1 bits: 237.4 E(32554): 1.1e-62
Smith-Waterman score: 2199; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KE5 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 KPGLELAPAEPAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KPGLELAPAEPAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 GCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPP
250 260 270 280 290 300
pF1KE5 TPAGPAS
:::::::
CCDS13 TPAGPAS
>>CCDS6421.1 SCRT1 gene_id:83482|Hs108|chr8 (348 aa)
initn: 1310 init1: 994 opt: 1069 Z-score: 614.6 bits: 122.0 E(32554): 6.5e-28
Smith-Waterman score: 1215; 58.5% identity (71.8% similar) in 347 aa overlap (5-305:5-341)
10 20 30 40 50
pF1KE5 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGAR---GPP-GDNGYAPHRLPPSS-
:::::.: :.:. . ::.:: :: : : :.:: . :::
CCDS64 MPRSFLVKKVKLDAFSSAD--------LESAY--GRARSDLGAPLHDKGYLSDYVGPSSV
10 20 30 40 50
60 70 80 90 100
pF1KE5 YDADQKPGLELAPA-EPAYPPAAPEEY-------SDPESPQSSLSAR---YFRGEAAVTD
::.: . .: .:. :: : :. : . : .:. :.. :. :.:::..
CCDS64 YDGDAEAALLKGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSE
60 70 80 90 100 110
110 120 130 140
pF1KE5 SYSMDAFFISDGRSRRRRGGGG--------------GDAGGSGDAGG------AGGRAG-
.:. :::::.::::::. ...: :::::.: ::: :::.:
CCDS64 GYAADAFFITDGRSRRKASNAGAAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGT
120 130 140 150 160 170
150 160 170 180 190
pF1KE5 RAGA---------QAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKA
:::: ::.: ::::.::::::::::::::::::::::::::::.::::::.
CCDS64 RAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKV
180 190 200 210 220 230
200 210 220 230 240 250
pF1KE5 YVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSN
::::::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSN
240 250 260 270 280 290
260 270 280 290 300
pF1KE5 LRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTPAGPAS
:::::::::::::..:..: :::::::::.:: :.:: :.. : .:: :
CCDS64 LRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
300 310 320 330 340
>>CCDS6146.1 SNAI2 gene_id:6591|Hs108|chr8 (268 aa)
initn: 810 init1: 582 opt: 605 Z-score: 359.6 bits: 74.4 E(32554): 1e-13
Smith-Waterman score: 614; 39.5% identity (59.9% similar) in 299 aa overlap (1-294:1-267)
10 20 30 40 50 60
pF1KE5 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
::::::::: :. : :.: :.: :. . : ..:. .: :
CCDS61 MPRSFLVKK----HFNAS--KKPNYSELDTHTVIIS---PYLYESYSMPVIP-------Q
10 20 30 40
70 80 90 100 110
pF1KE5 KPGLELAPAEP--AYPPAAPEEYSDPE--SPQSSLSARYFR-GEAAVTDSYSMDAFFISD
: . : .. ::: . . :. :: :. :. : . .:. : :
CCDS61 PEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDH-----
50 60 70 80 90
120 130 140 150 160 170
pF1KE5 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQ
.:... : . .. . .: ... : :.:::.: :.:..:::
CCDS61 ---------SGSESPISDEEERLQSKL--SDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQ
100 110 120 130 140
180 190 200 210 220 230
pF1KE5 THRSLDSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHT
: . .:. . .: : : :::. :: ::. ::.: : .::::::::::::::.:.::
CCDS61 LHCDAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHT
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE5 GEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAA
:::::.: ::..:::::::::::.:::: :.:.:..:.:.:. : :::: :..: :
CCDS61 GEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
210 220 230 240 250 260
300
pF1KE5 EPPPPTPAGPAS
>>CCDS32505.1 SNAI3 gene_id:333929|Hs108|chr16 (292 aa)
initn: 610 init1: 498 opt: 578 Z-score: 344.3 bits: 71.7 E(32554): 7.4e-13
Smith-Waterman score: 589; 39.4% identity (59.3% similar) in 307 aa overlap (1-291:1-288)
10 20 30 40 50 60
pF1KE5 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
:::::::: :. .:.:. ::: . :: . : . .: : : . .: .
CCDS32 MPRSFLVKT-------HSSHRVPNYRRLETQREINGACSACG-GLVVP--LLPRDKEAPS
10 20 30 40 50
70 80 90 100 110
pF1KE5 KPGLELAPAEPAYPPAAPEEYSDPESP--QSSLSARYFRG-EAAVTDSYSMDAFFI--SD
:: .: : .: .: : : : . .:.: . . :.. .: . : .. .:
CCDS32 VPG-DL-P-QPWDRSSAVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKD
60 70 80 90 100
120 130 140 150 160
pF1KE5 GRSR-----------RRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTY
. .. : : : :. . .. : :: :: . : .: : :
CCDS32 SLNHLNLPPLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRA----PGGFE--CFHCHKPY
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE5 ATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRP
: ..:.::.: : :. . : : : :.:. :: ::. ::.: : .::::::::
CCDS32 HTLAGLARHRQLHCHLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRP
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE5 WLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLH
::::::.:.::::::..:.::..:::::::::::.:::: :.::::.: :.:. : :
CCDS32 WLLQGHVRTHTGEKPYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLA
230 240 250 260 270 280
290 300
pF1KE5 KHCEAACAKAAEPPPPTPAGPAS
.: :..:
CCDS32 RHEESGCCPGP
290
>>CCDS13423.1 SNAI1 gene_id:6615|Hs108|chr20 (264 aa)
initn: 669 init1: 467 opt: 519 Z-score: 312.1 bits: 65.6 E(32554): 4.6e-11
Smith-Waterman score: 519; 58.3% identity (82.6% similar) in 115 aa overlap (178-292:146-260)
150 160 170 180 190 200
pF1KE5 QAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLT
..:... : .: :.: :.:. :: ::. .
CCDS13 TSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRS
120 130 140 150 160 170
210 220 230 240 250 260
pF1KE5 HNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKH
:.: ::.::::::::::::::.:.:::::::.: ::..:::::::::::.:::: :.
CCDS13 HTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKK
180 190 200 210 220 230
270 280 290 300
pF1KE5 YRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTPAGPAS
:.:. : ..:. : :::: :..:.
CCDS13 YQCQACARTFSRMSLLHKHQESGCSGCPR
240 250 260
307 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:37:51 2016 done: Tue Nov 8 04:37:52 2016
Total Scan time: 2.770 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]