FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5057, 192 aa
  1>>>pF1KE5057 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7877+/-0.000827; mu= 15.6143+/- 0.049
 mean_var=58.9344+/-12.252, 0's: 0 Z-trim(106.1): 25  B-trim: 3 in 1/45
 Lambda= 0.167067
 statistics sampled from 8774 (8778) to 8774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.27), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS33281.1 TMEM37 gene_id:140738|Hs108|chr2       ( 190) 1256 310.8 3.3e-85


>>CCDS33281.1 TMEM37 gene_id:140738|Hs108|chr2            (190 aa)
 initn: 799 init1: 799 opt: 1256  Z-score: 1643.2  bits: 310.8 E(32554): 3.3e-85
Smith-Waterman score: 1256; 98.4% identity (99.0% similar) in 192 aa overlap (1-192:1-190)

               10        20        30        40        50        60
pF1KE5 MTAVGVQAQRPLGQRQPRRSFFESFIRTLIITCVALAVVLSSVSICDGHWLLAEDRLFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MTAVGVQAQRPLGQRQPRRSFFESFIRTLIITCVALAVVLSSVSICDGHWLLAEDRLFGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 WHFCTTTNQSVPICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAIFGLEFLMVSQLCEDK
       :::::::::.  ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WHFCTTTNQT--ICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAIFGLEFLMVSQLCEDK
               70          80        90       100       110        

              130       140       150       160       170       180
pF1KE5 HSQCKWVMGSILLLVSFVLSSGGLLGFVILLRNQVTLIGFTLMFWCEFTASFLLFLNAIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HSQCKWVMGSILLLVSFVLSSGGLLGFVILLRNQVTLIGFTLMFWCEFTASFLLFLNAIS
      120       130       140       150       160       170        

              190  
pF1KE5 GLHINSITHPWE
       ::::::::::::
CCDS33 GLHINSITHPWE
      180       190




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:36:38 2016 done: Tue Nov  8 04:36:38 2016
 Total Scan time:  1.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]