FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5054, 153 aa
  1>>>pF1KE5054 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9867+/-0.000721; mu= 13.4032+/- 0.044
 mean_var=55.7033+/-10.914, 0's: 0 Z-trim(107.9): 10  B-trim: 0 in 0/51
 Lambda= 0.171844
 statistics sampled from 9835 (9840) to 9835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.302), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS694.1 DNASE2B gene_id:58511|Hs108|chr1         ( 153) 1073 273.5 3.4e-74
CCDS44167.1 DNASE2B gene_id:58511|Hs108|chr1       ( 361) 1073 273.7 7.2e-74
CCDS12284.1 DNASE2 gene_id:1777|Hs108|chr19        ( 360)  368 98.9 2.9e-21


>>CCDS694.1 DNASE2B gene_id:58511|Hs108|chr1              (153 aa)
 initn: 1073 init1: 1073 opt: 1073  Z-score: 1445.4  bits: 273.5 E(32554): 3.4e-74
Smith-Waterman score: 1073; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE5 MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS
               70        80        90       100       110       120

              130       140       150   
pF1KE5 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK
       :::::::::::::::::::::::::::::::::
CCDS69 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK
              130       140       150   

>>CCDS44167.1 DNASE2B gene_id:58511|Hs108|chr1            (361 aa)
 initn: 1073 init1: 1073 opt: 1073  Z-score: 1439.7  bits: 273.7 E(32554): 7.2e-74
Smith-Waterman score: 1073; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:209-361)

                                             10        20        30
pF1KE5                               MPQLCTRASSSEIPGRLLTTLQSAQGQKFL
                                     ::::::::::::::::::::::::::::::
CCDS44 YEAIDSQLLVCNPNVYSCSIPATFHQELIHMPQLCTRASSSEIPGRLLTTLQSAQGQKFL
      180       190       200       210       220       230        

               40        50        60        70        80        90
pF1KE5 HFAKSDSFLDDIFAAWMAQRLKTHLLTETWQRKRQELPSNCSLPYHVYNIKAIKLSRHSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HFAKSDSFLDDIFAAWMAQRLKTHLLTETWQRKRQELPSNCSLPYHVYNIKAIKLSRHSY
      240       250       260       270       280       290        

              100       110       120       130       140       150
pF1KE5 FSSYQDHAKWCISQKGTKNRWTCIGDLNRSPHQAFRSGGFICTQNWQIYQAFQGLVLYYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FSSYQDHAKWCISQKGTKNRWTCIGDLNRSPHQAFRSGGFICTQNWQIYQAFQGLVLYYE
      300       310       320       330       340       350        

          
pF1KE5 SCK
       :::
CCDS44 SCK
      360 

>>CCDS12284.1 DNASE2 gene_id:1777|Hs108|chr19             (360 aa)
 initn: 272 init1: 150 opt: 368  Z-score: 495.1  bits: 98.9 E(32554): 2.9e-21
Smith-Waterman score: 368; 39.6% identity (63.2% similar) in 144 aa overlap (11-152:207-347)

                                   10        20        30        40
pF1KE5                     MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLD
                                     :. :     :: :  :  :  ::: ..: :
CCDS12 TYPWVYNYQLEGIFAQEFPDLENVVKGHHVSQEPWNSSITLTSQAGAVFQSFAKFSKFGD
        180       190       200       210       220       230      

               50        60        70        80          90        
pF1KE5 DIFAAWMAQRLKTHLLTETWQRKRQELPSNCSLPYHVYNIKAIKLSRHS--YFSSYQDHA
       :....:.:  : :.: .. :..    ::::::  ..: :.. : .   .   :.: .::.
CCDS12 DLYSGWLAAALGTNLQVQFWHKTVGILPSNCSDIWQVLNVNQIAFPGPAGPSFNSTEDHS
        240       250       260       270       280       290      

      100       110       120       130       140       150        
pF1KE5 KWCISQKGTKNRWTCIGDLNRSPHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK     
       :::.: ::    :::.::.::.  .  :.:: .:.:   ...::: ::  :. :      
CCDS12 KWCVSPKGP---WTCVGDMNRNQGEEQRGGGTLCAQLPALWKAFQPLVKNYQPCNGMARK
        300          310       320       330       340       350   

CCDS12 PSRAYKI
           360




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:34:54 2016 done: Tue Nov  8 04:34:54 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]