FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5053, 169 aa
  1>>>pF1KE5053 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5671+/-0.000654; mu= 5.7534+/- 0.040
 mean_var=158.3142+/-31.722, 0's: 0 Z-trim(117.0): 3  B-trim: 0 in 0/53
 Lambda= 0.101933
 statistics sampled from 17678 (17681) to 17678 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.543), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS32881.1 VMAC gene_id:400673|Hs108|chr19        ( 169) 1106 172.6   1e-43


>>CCDS32881.1 VMAC gene_id:400673|Hs108|chr19             (169 aa)
 initn: 1106 init1: 1106 opt: 1106  Z-score: 898.3  bits: 172.6 E(32554): 1e-43
Smith-Waterman score: 1106; 99.4% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE5 MSAPPALQIREANAHLAAVHRRAAELEARLDAAERTVHAQAERLALHDQQLRAALDELGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSAPPALQIREANAHLAAVHRRAAELEARLDAAERTVHAQAERLALHDQQLRAALDELGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 AKDREIATLQEQLMTSEATVHSLQATVHQRDELIRQLQPRAELLQDICHRRPPLAGLLDA
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS32 AKDREIATLQEQLMTSEATVHSLQATVHQRDELIRQLQPRAELLQDICRRRPPLAGLLDA
               70        80        90       100       110       120

              130       140       150       160         
pF1KE5 LAEAERLGPLPASDPGHPPPGGPGPPLDNSTGEEADRDHLQPAVFGTTV
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LAEAERLGPLPASDPGHPPPGGPGPPLDNSTGEEADRDHLQPAVFGTTV
              130       140       150       160         




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:34:22 2016 done: Tue Nov  8 04:34:23 2016
 Total Scan time:  1.810 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]