FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5021, 430 aa
  1>>>pF1KE5021 430 - 430 aa - 430 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7820+/-0.000723; mu= 21.3868+/- 0.044
 mean_var=76.0210+/-15.355, 0's: 0 Z-trim(110.8): 31  B-trim: 401 in 1/50
 Lambda= 0.147098
 statistics sampled from 11891 (11920) to 11891 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.366), width:  16
 Scan time:  3.210

The best scores are:                                      opt bits E(32554)
CCDS1835.1 KCNK12 gene_id:56660|Hs108|chr2         ( 430) 2893 623.0 1.7e-178
CCDS9889.1 KCNK13 gene_id:56659|Hs108|chr14        ( 408) 1732 376.6 2.4e-104


>>CCDS1835.1 KCNK12 gene_id:56660|Hs108|chr2              (430 aa)
 initn: 2893 init1: 2893 opt: 2893  Z-score: 3318.1  bits: 623.0 E(32554): 1.7e-178
Smith-Waterman score: 2893; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430)

               10        20        30        40        50        60
pF1KE5 MSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ERQLRRSGLLPATFRRGSALSEADSLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ERQLRRSGLLPATFRRGSALSEADSLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 WDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 WDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 LIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 GRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMN
              370       380       390       400       410       420

              430
pF1KE5 NRLAETSASR
       ::::::::::
CCDS18 NRLAETSASR
              430

>>CCDS9889.1 KCNK13 gene_id:56659|Hs108|chr14             (408 aa)
 initn: 1794 init1: 1392 opt: 1732  Z-score: 1986.8  bits: 376.6 E(32554): 2.4e-104
Smith-Waterman score: 1732; 65.5% identity (84.5% similar) in 400 aa overlap (31-430:12-408)

               10        20        30        40        50        60
pF1KE5 MSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSAL
                                     :::::..::.:::::: :::..::.:::::
CCDS98                    MAGRGFSWGPGHLNEDNARFLLLAALIVLYLLGGAAVFSAL
                                  10        20        30        40 

               70        80        90       100       110       120
pF1KE5 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF
       :   : .:. ::   : ::: .:.... :::.:::::: :  ::.:.: .:::::: :::
CCDS98 ELAHERQAKQRWEERLANFSRGHNLSRDELRGFLRHYEEATRAGIRVDNVRPRWDFTGAF
              50        60        70        80        90       100 

              130       140       150       160       170       180
pF1KE5 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACR
       ::::::::::::::::::::::: ::: ::: ::..:::::::::::.:...:.::..:.
CCDS98 YFVGTVVSTIGFGMTTPATVGGKIFLIFYGLVGCSSTILFFNLFLERLITIIAYIMKSCH
             110       120       130       140       150       160 

              190       200       210       220       230       240
pF1KE5 ERQLRRSGLLPATFRRGSALSEADSLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEG
       .::::: : ::    . ..  :.:::::::::::.:.:::   ..:.::::::::: .::
CCDS98 QRQLRRRGALPQESLKDAGQCEVDSLAGWKPSVYYVMLILCTASILISCCASAMYTPIEG
             170       180       190       200       210       220 

              250       260       270       280       290       300
pF1KE5 WDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISI
       :.: ::::::::.:::::::::::::.: :..:::::..::.:::.::::::::::::::
CCDS98 WSYFDSLYFCFVAFSTIGFGDLVSSQNAHYESQGLYRFANFVFILMGVCCIYSLFNVISI
             230       240       250       260       270       280 

              310       320       330       340       350       360
pF1KE5 LIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAE
       :::: :::.:::..  :: .:    :   .:::.. :::   :   .. .: .: .::..
CCDS98 LIKQSLNWILRKMDSGCCPQC--QRGLLRSRRNVVMPGSVRNRCNISIETDGVA-ESDTD
             290       300         310       320       330         

              370       380       390       400       410       420
pF1KE5 GRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMN
       :::::::.:::.:: :.::.:::.::::::: ::: :... . .:.: :::::::..:::
CCDS98 GRRLSGEMISMKDLLAANKASLAILQKQLSEMANGCPHQTSTLARDNEFSGGVGAFAIMN
      340       350       360       370       380       390        

              430
pF1KE5 NRLAETSASR
       :::::::..:
CCDS98 NRLAETSGDR
      400        




430 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:14:29 2016 done: Tue Nov  8 04:14:30 2016
 Total Scan time:  3.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]