FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5012, 1001 aa
  1>>>pF1KE5012 1001 - 1001 aa - 1001 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0337+/-0.00131; mu= 0.6844+/- 0.079
 mean_var=300.7612+/-63.068, 0's: 0 Z-trim(108.6): 75  B-trim: 138 in 1/52
 Lambda= 0.073954
 statistics sampled from 10284 (10340) to 10284 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.318), width:  16
 Scan time:  4.100

The best scores are:                                      opt bits E(32554)
CCDS43755.1 RBM12B gene_id:389677|Hs108|chr8       (1001) 7100 772.5       0


>>CCDS43755.1 RBM12B gene_id:389677|Hs108|chr8            (1001 aa)
 initn: 7100 init1: 7100 opt: 7100  Z-score: 4112.6  bits: 772.5 E(32554):    0
Smith-Waterman score: 7100; 100.0% identity (100.0% similar) in 1001 aa overlap (1-1001:1-1001)

               10        20        30        40        50        60
pF1KE5 MAVVIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEIGEAFIIFATDEDARRAISRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAVVIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEIGEAFIIFATDEDARRAISRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 VKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 RNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 KQMLKFIARYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQMLKFIARYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 ADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVLLRLISEAQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVLLRLISEAQI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 QEFGVNFSVMSSEKMQARSQSRERGDHSHLFDSKDPPIYSVGAFENFRHQLEDLRQLDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEFGVNFSVMSSEKMQARSQSRERGDHSHLFDSKDPPIYSVGAFENFRHQLEDLRQLDNF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 KHPQRDFRQPDRHPPEDFRHSSEDFRFPPEDFRHSPEDFRRPREEDFRRPSEEDFRRPWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KHPQRDFRQPDRHPPEDFRHSSEDFRFPPEDFRHSPEDFRRPREEDFRRPSEEDFRRPWE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE5 EDFRRPPEDDFRHPREEDWRRPLEEDWRRPLEEDFRRSPTEDFRQLPEEDFRQPPEEDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDFRRPPEDDFRHPREEDWRRPLEEDWRRPLEEDFRRSPTEDFRQLPEEDFRQPPEEDLR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE5 WLPEEDFRRPPEEDWRRPPEEDFRRPLQGEWRRPPEDDFRRPPEEDFRHSPEEDFRQSPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WLPEEDFRRPPEEDWRRPPEEDFRRPLQGEWRRPPEDDFRRPPEEDFRHSPEEDFRQSPQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE5 EHFRRPPQEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EHFRRPPQEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE5 RPPQEHFRRPPQEHFRRSREEDFRHPPDEDFRGPPDEDFRHPPDEDFRSPQEEDFRCPSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RPPQEHFRRPPQEHFRRSREEDFRHPPDEDFRGPPDEDFRHPPDEDFRSPQEEDFRCPSD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE5 EDFRQLPEEDLREAPEEDPRLPDNFRPPGEDFRSPPDDFRSHRPFVNFGRPEGGKFDFGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDFRQLPEEDLREAPEEDPRLPDNFRPPGEDFRSPPDDFRSHRPFVNFGRPEGGKFDFGK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE5 HNMGSFPEGRFMPDPKINCGSGRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HNMGSFPEGRFMPDPKINCGSGRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYN
              910       920       930       940       950       960

              970       980       990      1000 
pF1KE5 EQGLPTGEAIVAMINYNEAMAAIKDLNDRPVGPRKVKLTLL
       :::::::::::::::::::::::::::::::::::::::::
CCDS43 EQGLPTGEAIVAMINYNEAMAAIKDLNDRPVGPRKVKLTLL
              970       980       990      1000 




1001 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:08:40 2016 done: Tue Nov  8 04:08:41 2016
 Total Scan time:  4.100 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]