FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4586, 890 aa
  1>>>pF1KE4586 890 - 890 aa - 890 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9627+/-0.00103; mu= 11.4169+/- 0.063
 mean_var=189.1860+/-37.221, 0's: 0 Z-trim(111.4): 3  B-trim: 0 in 0/50
 Lambda= 0.093246
 statistics sampled from 12317 (12318) to 12317 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.378), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS3386.1 WFS1 gene_id:7466|Hs108|chr4            ( 890) 5953 813.8       0


>>CCDS3386.1 WFS1 gene_id:7466|Hs108|chr4                 (890 aa)
 initn: 5953 init1: 5953 opt: 5953  Z-score: 4338.0  bits: 813.8 E(32554):    0
Smith-Waterman score: 5953; 100.0% identity (100.0% similar) in 890 aa overlap (1-890:1-890)

               10        20        30        40        50        60
pF1KE4 MDSNTAPLGPSCPQPPPAPQPQARSRLNATASLEQERSERPRAPGPQAGPGPGVRDAAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MDSNTAPLGPSCPQPPPAPQPQARSRLNATASLEQERSERPRAPGPQAGPGPGVRDAAAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 AEPQAQHTRSRERADGTGPTKGDMEIPFEEVLERAKAGDPKAQTEVGKHYLQLAGDTDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AEPQAQHTRSRERADGTGPTKGDMEIPFEEVLERAKAGDPKAQTEVGKHYLQLAGDTDEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LNSCTAVDWLVLAAKQGRREAVKLLRRCLADRRGITSENEREVRQLSSETDLERAVRKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LNSCTAVDWLVLAAKQGRREAVKLLRRCLADRRGITSENEREVRQLSSETDLERAVRKAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LVMYWKLNPKKKKQVAVAELLENVGQVNEHDGGAQPGPVPKSLQKQRRMLERLVSSESKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVMYWKLNPKKKKQVAVAELLENVGQVNEHDGGAQPGPVPKSLQKQRRMLERLVSSESKN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 YIALDDFVEITKKYAKGVIPSSLFLQDDEDDDELAGKSPEDLPLRLKVVKYPLHAIMEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YIALDDFVEITKKYAKGVIPSSLFLQDDEDDDELAGKSPEDLPLRLKVVKYPLHAIMEIK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 EYLIDMASRAGMHWLSTIIPTHHINALIFFFIVSNLTIDFFAFFIPLVIFYLSFISMVIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EYLIDMASRAGMHWLSTIIPTHHINALIFFFIVSNLTIDFFAFFIPLVIFYLSFISMVIC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 TLKVFQDSKAWENFRTLTDLLLRFEPNLDVEQAEVNFGWNHLEPYAHFLLSVFFVIFSFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLKVFQDSKAWENFRTLTDLLLRFEPNLDVEQAEVNFGWNHLEPYAHFLLSVFFVIFSFP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 IASKDCIPCSELAVITGFFTVTSYLSLSTHAEPYTRRALATEVTAGLLSLLPSMPLNWPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IASKDCIPCSELAVITGFFTVTSYLSLSTHAEPYTRRALATEVTAGLLSLLPSMPLNWPY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 LKVLGQTFITVPVGHLVVLNVSVPCLLYVYLLYLFFRMAQLRNFKGTYCYLVPYLVCFMW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKVLGQTFITVPVGHLVVLNVSVPCLLYVYLLYLFFRMAQLRNFKGTYCYLVPYLVCFMW
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 CELSVVILLESTGLGLLRASIGYFLFLFALPILVAGLALVGVLQFARWFTSLELTKIAVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CELSVVILLESTGLGLLRASIGYFLFLFALPILVAGLALVGVLQFARWFTSLELTKIAVT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 VAVCSVPLLLRWWTKASFSVVGMVKSLTRSSMVKLILVWLTAIVLFCWFYVYRSEGMKVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VAVCSVPLLLRWWTKASFSVVGMVKSLTRSSMVKLILVWLTAIVLFCWFYVYRSEGMKVY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE4 NSTLTWQQYGALCGPRAWKETNMARTQILCSHLEGHRVTWTGRFKYVRVTDIDNSAESAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NSTLTWQQYGALCGPRAWKETNMARTQILCSHLEGHRVTWTGRFKYVRVTDIDNSAESAI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE4 NMLPFFIGDWMRCLYGEAYPACSPGNTSTAEEELCRLKLLAKHPCHIKKFDRYKFEITVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NMLPFFIGDWMRCLYGEAYPACSPGNTSTAEEELCRLKLLAKHPCHIKKFDRYKFEITVG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE4 MPFSSGADGSRSREEDDVTKDIVLRASSEFKSVLLSLRQGSLIEFSTILEGRLGSKWPVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MPFSSGADGSRSREEDDVTKDIVLRASSEFKSVLLSLRQGSLIEFSTILEGRLGSKWPVF
              790       800       810       820       830       840

              850       860       870       880       890
pF1KE4 ELKAISCLNCMAQLSPTRRHVKIEHDWRSTVHGAVKFAFDFFFFPFLSAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELKAISCLNCMAQLSPTRRHVKIEHDWRSTVHGAVKFAFDFFFFPFLSAA
              850       860       870       880       890




890 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:28:54 2016 done: Mon Nov  7 17:28:55 2016
 Total Scan time:  3.560 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]