FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4583, 840 aa
  1>>>pF1KE4583 840 - 840 aa - 840 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7342+/-0.00112; mu= 17.6848+/- 0.067
 mean_var=67.6512+/-13.452, 0's: 0 Z-trim(102.3): 39  B-trim: 2 in 1/48
 Lambda= 0.155932
 statistics sampled from 6844 (6875) to 6844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.577), E-opt: 0.2 (0.211), width:  16
 Scan time:  3.320

The best scores are:                                      opt bits E(32554)
CCDS4553.1 GPLD1 gene_id:2822|Hs108|chr6           ( 840) 5685 1288.8       0


>>CCDS4553.1 GPLD1 gene_id:2822|Hs108|chr6                (840 aa)
 initn: 5685 init1: 5685 opt: 5685  Z-score: 6905.5  bits: 1288.8 E(32554):    0
Smith-Waterman score: 5685; 100.0% identity (100.0% similar) in 840 aa overlap (1-840:1-840)

               10        20        30        40        50        60
pF1KE4 MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQFEFNFNYLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQFEFNFNYLAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 RWYVPVKDLLGIYEKLYGRKVITENVIVDCSHIQFLEMYGEMLAVSKLYPTYSTKSPFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RWYVPVKDLLGIYEKLYGRKVITENVIVDCSHIQFLEMYGEMLAVSKLYPTYSTKSPFLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 EQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQQNHTQGSKMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQQNHTQGSKMQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 KNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSMSFIYKALERNIRTMFIGGSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSMSFIYKALERNIRTMFIGGSQL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 SQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGHIHIGRVYLIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGHIHIGRVYLIY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 GNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSALAVLDFNVDGVPDLAVGAPSVGSEQLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSALAVLDFNVDGVPDLAVGAPSVGSEQLT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 YKGAVYVYFGSKQGGMSSSPNITISCQDIYCNLGWTLLAADVNGDSEPDLVIGSPFAPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YKGAVYVYFGSKQGGMSSSPNITISCQDIYCNLGWTLLAADVNGDSEPDLVIGSPFAPGG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 GKQKGIVAAFYSGPSLSDKEKLNVEAANWTVRGEEDFSWFGYSLHGVTVDNRTLLLVGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GKQKGIVAAFYSGPSLSDKEKLNVEAANWTVRGEEDFSWFGYSLHGVTVDNRTLLLVGSP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 TWKNASRLGHLLHIRDEKKSLGRVYGYFPPNGQSWFTISGDKAMGKLGTSLSSGHVLMNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TWKNASRLGHLLHIRDEKKSLGRVYGYFPPNGQSWFTISGDKAMGKLGTSLSSGHVLMNG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE4 TLKQVLLVGAPTYDDVSKVAFLTVTLHQGGATRMYALTSDAQPLLLSTFSGDRRFSRFGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TLKQVLLVGAPTYDDVSKVAFLTVTLHQGGATRMYALTSDAQPLLLSTFSGDRRFSRFGG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE4 VLHLSDLDDDGLDEIIMAAPLRIADVTSGLIGGEDGRVYVYNGKETTLGDMTGKCKSWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VLHLSDLDDDGLDEIIMAAPLRIADVTSGLIGGEDGRVYVYNGKETTLGDMTGKCKSWIT
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE4 PCPEEKAQYVLISPEASSRFGSSLITVRSKAKNQVVIAAGRSSLGARLSGALHVYSLGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PCPEEKAQYVLISPEASSRFGSSLITVRSKAKNQVVIAAGRSSLGARLSGALHVYSLGSD
              790       800       810       820       830       840




840 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:46:41 2016 done: Sat Nov  5 23:46:42 2016
 Total Scan time:  3.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]