Result of FASTA (ccds) for
pFN21AE4575
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4575, 758 aa
1>>>pF1KE4575 758 - 758 aa - 758 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0985+/-0.000868; mu= 16.3534+/- 0.052
mean_var=77.6847+/-15.431, 0's: 0 Z-trim(107.8): 16 B-trim: 54 in 2/49
Lambda= 0.145515
statistics sampled from 9801 (9807) to 9801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.301), width: 16
Scan time: 3.040
The best scores are: opt bits E(32554)
CCDS1978.1 GGCX gene_id:2677|Hs108|chr2 ( 758) 5169 1094.9 0
CCDS46353.1 GGCX gene_id:2677|Hs108|chr2 ( 701) 4707 997.9 0
>>CCDS1978.1 GGCX gene_id:2677|Hs108|chr2 (758 aa)
initn: 5169 init1: 5169 opt: 5169 Z-score: 5859.5 bits: 1094.9 E(32554): 0
Smith-Waterman score: 5169; 100.0% identity (100.0% similar) in 758 aa overlap (1-758:1-758)
10 20 30 40 50 60
pF1KE4 MAVSAGSARTSPSSDKVQKDKAELISGPRQDSRIGKLLGFEWTDLSSWRRLVTLLNRPTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MAVSAGSARTSPSSDKVQKDKAELISGPRQDSRIGKLLGFEWTDLSSWRRLVTLLNRPTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 IMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHSYLYGLLAFQLTFMDANHYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 IMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHSYLYGLLAFQLTFMDANHYW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 SVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDADWVEGYSMEYLSRHWLFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDADWVEGYSMEYLSRHWLFSP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 FKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLFFVSYFHCMNSQLFSIGMFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 FKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLFFVSYFHCMNSQLFSIGMFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 YVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSVSCVYKRSRGKSGQKPGLRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 YVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSVSCVYKRSRGKSGQKPGLRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 QLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRSHQHVKITYRDGRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 QLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRSHQHVKITYRDGRT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 GELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVTEPQIYFDIWVSINDRFQQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 GELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVTEPQIYFDIWVSINDRFQQR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 IFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKSSLDNHTEVVFIADFPGLHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 IFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKSSLDNHTEVVFIADFPGLHL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 ENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 YVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPLLEGEVKGGPEPTPLVQTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 YVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPLLEGEVKGGPEPTPLVQTFL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 RRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCISLRNLILGRPSLEQLAQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 RRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCISLRNLILGRPSLEQLAQEV
670 680 690 700 710 720
730 740 750
pF1KE4 TYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF
::::::::::::::::::::::::::::::::::::::
CCDS19 TYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF
730 740 750
>>CCDS46353.1 GGCX gene_id:2677|Hs108|chr2 (701 aa)
initn: 4775 init1: 4707 opt: 4707 Z-score: 5335.9 bits: 997.9 E(32554): 0
Smith-Waterman score: 4707; 100.0% identity (100.0% similar) in 687 aa overlap (72-758:15-701)
50 60 70 80 90 100
pF1KE4 WTDLSSWRRLVTLLNRPTDPASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCRF
::::::::::::::::::::::::::::::
CCDS46 MAVSAGSARTSPSSGFLMVLDIPQERGLSSLDRKYLDGLDVCRF
10 20 30 40
110 120 130 140 150 160
pF1KE4 PLLDALRPLPLDWMYLVYTIMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PLLDALRPLPLDWMYLVYTIMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHS
50 60 70 80 90 100
170 180 190 200 210 220
pF1KE4 YLYGLLAFQLTFMDANHYWSVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YLYGLLAFQLTFMDANHYWSVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDA
110 120 130 140 150 160
230 240 250 260 270 280
pF1KE4 DWVEGYSMEYLSRHWLFSPFKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DWVEGYSMEYLSRHWLFSPFKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLF
170 180 190 200 210 220
290 300 310 320 330 340
pF1KE4 FVSYFHCMNSQLFSIGMFSYVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FVSYFHCMNSQLFSIGMFSYVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSV
230 240 250 260 270 280
350 360 370 380 390 400
pF1KE4 SCVYKRSRGKSGQKPGLRHQLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SCVYKRSRGKSGQKPGLRHQLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDM
290 300 310 320 330 340
410 420 430 440 450 460
pF1KE4 MVHSRSHQHVKITYRDGRTGELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MVHSRSHQHVKITYRDGRTGELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVT
350 360 370 380 390 400
470 480 490 500 510 520
pF1KE4 EPQIYFDIWVSINDRFQQRIFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EPQIYFDIWVSINDRFQQRIFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKS
410 420 430 440 450 460
530 540 550 560 570 580
pF1KE4 SLDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQL
470 480 490 500 510 520
590 600 610 620 630 640
pF1KE4 PAGEYHKVYTTSPSPSCYMYVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PAGEYHKVYTTSPSPSCYMYVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPL
530 540 550 560 570 580
650 660 670 680 690 700
pF1KE4 LEGEVKGGPEPTPLVQTFLRRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LEGEVKGGPEPTPLVQTFLRRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCI
590 600 610 620 630 640
710 720 730 740 750
pF1KE4 SLRNLILGRPSLEQLAQEVTYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLRNLILGRPSLEQLAQEVTYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF
650 660 670 680 690 700
758 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:10:42 2016 done: Mon Nov 7 17:10:42 2016
Total Scan time: 3.040 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]