FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4565, 702 aa
  1>>>pF1KE4565 702 - 702 aa - 702 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6277+/-0.000423; mu= 23.1442+/- 0.026
 mean_var=62.2551+/-12.404, 0's: 0 Z-trim(109.1): 14  B-trim: 41 in 1/52
 Lambda= 0.162550
 statistics sampled from 17280 (17286) to 17280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.203), width:  16
 Scan time:  9.010

The best scores are:                                      opt bits E(85289)
NP_000149 (OMIM: 232500,263570,607839) 1,4-alpha-g ( 702) 4866 1150.6       0


>>NP_000149 (OMIM: 232500,263570,607839) 1,4-alpha-gluca  (702 aa)
 initn: 4866 init1: 4866 opt: 4866  Z-score: 6161.8  bits: 1150.6 E(85289):    0
Smith-Waterman score: 4866; 99.9% identity (100.0% similar) in 702 aa overlap (1-702:1-702)

               10        20        30        40        50        60
pF1KE4 MAAPMTPAARPEDYEAALNAALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAAPMTPAARPEDYEAALNAALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 EHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 MEHAYYASFGYQITSFFAASSRYGSPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGL
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_000 MEHAYYASFGYQITSFFAASSRYGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 NMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 SMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPAL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 CSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 DQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 NEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 QAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGH
              610       620       630       640       650       660

              670       680       690       700  
pF1KE4 QRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVDLPN
       ::::::::::::::::::::::::::::::::::::::::::
NP_000 QRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVDLPN
              670       680       690       700  




702 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:52:56 2016 done: Sat Nov  5 23:52:57 2016
 Total Scan time:  9.010 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]