FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4565, 702 aa
  1>>>pF1KE4565 702 - 702 aa - 702 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0749+/-0.00102; mu= 20.2820+/- 0.061
 mean_var=57.9013+/-11.478, 0's: 0 Z-trim(102.6): 30  B-trim: 0 in 0/50
 Lambda= 0.168550
 statistics sampled from 7024 (7030) to 7024 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.581), E-opt: 0.2 (0.216), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS54612.1 GBE1 gene_id:2632|Hs108|chr3           ( 702) 4865 1191.9       0


>>CCDS54612.1 GBE1 gene_id:2632|Hs108|chr3                (702 aa)
 initn: 4865 init1: 4865 opt: 4865  Z-score: 6385.1  bits: 1191.9 E(32554):    0
Smith-Waterman score: 4865; 99.7% identity (100.0% similar) in 702 aa overlap (1-702:1-702)

               10        20        30        40        50        60
pF1KE4 MAAPMTPAARPEDYEAALNAALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAAPMTPAARPEDYEAALNAALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 EHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 MEHAYYASFGYQITSFFAASSRYGSPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGL
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS54 MEHAYYASFGYQITSFFAASSRYGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 NMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVT
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS54 NMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 SMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPAL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 CSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 DQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 NEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 QAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGH
              610       620       630       640       650       660

              670       680       690       700  
pF1KE4 QRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVDLPN
       ::::::::::::::::::::::::::::::::::::::::::
CCDS54 QRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVDLPN
              670       680       690       700  




702 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:52:55 2016 done: Sat Nov  5 23:52:56 2016
 Total Scan time:  3.340 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]