Result of FASTA (ccds) for
pFN21AE4562
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4562, 689 aa
1>>>pF1KE4562 689 - 689 aa - 689 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3326+/-0.00103; mu= 14.2265+/- 0.061
mean_var=76.4740+/-14.680, 0's: 0 Z-trim(104.8): 24 B-trim: 5 in 1/51
Lambda= 0.146662
statistics sampled from 8089 (8093) to 8089 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.249), width: 16
Scan time: 3.720
The best scores are: opt bits E(32554)
CCDS12095.1 THOP1 gene_id:7064|Hs108|chr19 ( 689) 4628 989.2 0
CCDS3989.1 NLN gene_id:57486|Hs108|chr5 ( 704) 2990 642.6 5.8e-184
CCDS9303.1 MIPEP gene_id:4285|Hs108|chr13 ( 713) 637 144.7 4.4e-34
>>CCDS12095.1 THOP1 gene_id:7064|Hs108|chr19 (689 aa)
initn: 4628 init1: 4628 opt: 4628 Z-score: 5289.5 bits: 989.2 E(32554): 0
Smith-Waterman score: 4628; 99.9% identity (99.9% similar) in 689 aa overlap (1-689:1-689)
10 20 30 40 50 60
pF1KE4 MKPPAACAGDMADAASPCSVVNDLRWDLSAQQIEERTRELIEQTKRVYDQVGTQEFEDVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKPPAACAGDMADAASPCSVVNDLRWDLSAQQIEERTRELIEQTKRVYDQVGTQEFEDVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 YESTLKALADVEVTYTVQRNILDFPQHVSPSKDIRTASTEADKKLSEFDVEMSMREDVYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YESTLKALADVEVTYTVQRNILDFPQHVSPSKDIRTASTEADKKLSEFDVEMSMREDVYQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 NLNEDTTFLPFTLQELGGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NLNEDTTFLPFTLQELGGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 EEAFNCRCKEENCAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEAFNCRCKEENCAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 KPKPLGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYF
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KLKPLGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVQVVTHGLLGIYQELLGLAFHHEEGASAWHEDVRLYTARDAASGEVVGKFYLDLYPREG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PVQVVTHGLLGIYQELLGLAFHHEEGASAWHEDVRLYTARDAASGEVVGKFYLDLYPREG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 KYGHAACFGLQPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVETYFHEFGHVMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KYGHAACFGLQPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVETYFHEFGHVMH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 QLCSQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QLCSQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 ESRQANTGLFNLRQIVLAKVDQALHTQTDADPAEEYARLCQEILGVPATPGTNMPATFGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ESRQANTGLFNLRQIVLAKVDQALHTQTDADPAEEYARLCQEILGVPATPGTNMPATFGH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 LAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRR
610 620 630 640 650 660
670 680
pF1KE4 FLGRDPKQDAFLLSKGLQVGGCEPEPQVC
:::::::::::::::::::::::::::::
CCDS12 FLGRDPKQDAFLLSKGLQVGGCEPEPQVC
670 680
>>CCDS3989.1 NLN gene_id:57486|Hs108|chr5 (704 aa)
initn: 3015 init1: 2987 opt: 2990 Z-score: 3416.2 bits: 642.6 E(32554): 5.8e-184
Smith-Waterman score: 2990; 64.7% identity (86.8% similar) in 657 aa overlap (22-678:46-702)
10 20 30 40 50
pF1KE4 MKPPAACAGDMADAASPCSVVNDLRWDLSAQQIEERTRELIEQTKRVYDQV
: :::::: .::. ::.::: :::.::: :
CCDS39 GGSRILLRMTLGREVMSPLQAMSSYTVAGRNVLRWDLSPEQIKTRTEELIVQTKQVYDAV
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE4 GTQEFEDVSYESTLKALADVEVTYTVQRNILDFPQHVSPSKDIRTASTEADKKLSEFDVE
: .:.:.::. :.::::::: : :.:..:::::::: .:..:.:::::::.::.::.:
CCDS39 GMLGIEEVTYENCLQALADVEVKYIVERTMLDFPQHVSSDKEVRAASTEADKRLSRFDIE
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE4 MSMREDVYQRIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIKKKL
:::: :...::: ::: . ...::: ::::. ::.:.:::::::...:..:: .::..
CCDS39 MSMRGDIFERIVHLQETCDLGKIKPEARRYLEKSIKMGKRNGLHLPEQVQNEIKSMKKRM
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE4 SLLCIDFNKNLNEDTTFLPFTLQELGGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKC
: :::::::::::: ::: :. :::.::.::..:::: .: : :.:::::::::..:::
CCDS39 SELCIDFNKNLNEDDTFLVFSKAELGALPDDFIDSLEKTDDDKYKITLKYPHYFPVMKKC
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE4 HVPETRRKVEEAFNCRCKEENCAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTV
.:::::..: ::: :::::: ::..:. ::.. ..:::. ::::.::::: ::... :
CCDS39 CIPETRRRMEMAFNTRCKEENTIILQQLLPLRTKVAKLLGYSTHADFVLEMNTAKSTSRV
260 270 280 290 300 310
300 310 320 330 340 350
pF1KE4 ATFLDELAQKPKPLGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCV
..:::.:.:: ::::: :: ::.::. ::. ::. .::.: :::. :::.:.:: .: .
CCDS39 TAFLDDLSQKLKPLGEAEREFILNLKKKECKDRGFEYDGKINAWDLYYYMTQTEELKYSI
320 330 340 350 360 370
360 370 380 390 400 410
pF1KE4 DQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEGASAWHEDVRLYTARDAASGEVVGKF
::..::::::..:::.:::. :::::::.:.. : .:...: :::..: :.:::.:.:
CCDS39 DQEFLKEYFPIEVVTEGLLNTYQELLGLSFEQMTDAHVWNKSVTLYTVKDKATGEVLGQF
380 390 400 410 420 430
420 430 440 450 460 470
pF1KE4 YLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVETY
:::::::::::.:::::::::::: ::::..:.::.:.::..:.: ::::.::::.::
CCDS39 YLDLYPREGKYNHAACFGLQPGCLLPDGSRMMAVAALVVNFSQPVAGRPSLLRHDEVRTY
440 450 460 470 480 490
480 490 500 510 520 530
pF1KE4 FHEFGHVMHQLCSQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAV
::::::::::.:.:..:: ::::.:: ::::.::::::::::. . : :.:.::. :: .
CCDS39 FHEFGHVMHQICAQTDFARFSGTNVETDFVEVPSQMLENWVWDVDSLRRLSKHYKDGSPI
500 510 520 530 540 550
540 550 560 570 580 590
pF1KE4 PRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADPAEEYARLCQEILGVPATPG
.:::::. :: .::::..::::::.::::.:::.:. : : :::. :.::::: ::::
CCDS39 ADDLLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNTSLDAASEYAKYCSEILGVAATPG
560 570 580 590 600 610
600 610 620 630 640 650
pF1KE4 TNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGS
:::::::::::::::.::::::::::.:::::.. ::.::..: .::: ::. ::.::::
CCDS39 TNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFYSCFKKEGIMNPEVGMKYRNLILKPGGS
620 630 640 650 660 670
660 670 680
pF1KE4 EDASAMLRRFLGRDPKQDAFLLSKGLQVGGCEPEPQVC
:. ::. :: :.:.: :::.:.::.
CCDS39 LDGMDMLHNFLKREPNQKAFLMSRGLHAP
680 690 700
>>CCDS9303.1 MIPEP gene_id:4285|Hs108|chr13 (713 aa)
initn: 508 init1: 293 opt: 637 Z-score: 725.4 bits: 144.7 E(32554): 4.4e-34
Smith-Waterman score: 707; 27.3% identity (58.5% similar) in 607 aa overlap (80-672:120-694)
50 60 70 80 90 100
pF1KE4 QVGTQEFEDVSYESTLKALADVEVTYTVQRNILDFPQHVSPSKDIRTASTEADKKLSEFD
.. :: . . : .: :. :: .... .
CCDS93 LLVDRACSTPPGPQTVLIFDELSDSLCRVADLADFVKIAHPEPAFREAAEEACRSIGTMV
90 100 110 120 130 140
110 120 130 140 150 160
pF1KE4 VEMSMREDVYQRIV-WLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIK
... :.:: . : .: ::: ::. : : .. . .:.:: .: :
CCDS93 EKLNTNVDLYQSLQKLLADKKLVDSLDPETRRVAELFMFDFEISGIHLDKE--------K
150 160 170 180 190 200
170 180 190 200 210 220
pF1KE4 KKLSLLCIDFN-KNLNEDTTFLPFTLQELGGLPEDFLNSLEKM---EDGKLKVTLKYPHY
.: . .:.: : :. ..::: .: .: :..:: : . . : :
CCDS93 RKRA---VDLNVKILDLSSTFL------MG---TNFPNKIEKHLLPEHIRRNFTSAGDHI
210 220 230 240
230 240 250 260 270 280
pF1KE4 FPLLKKCHVPETRRKVEEAFNCRCKEENCAILK---ELVTLRAQKSRLLGFHTHADYVLE
.. :. :.:: : . :: ::.. : ..:.:. : . .:.
CCDS93 --IIDGLHAESPDDLVREAAYKIFLYPNAGQLKCLEELLSSRDLLAKLVGYSTFSHRALQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE4 MNMAKTSQTVATFLDELAQKPKPLGEQERAVI-LELKRAECERRGLPFDGRIRAWDMRYY
..::. .:: ::..:..: .::.. .:. :. . . : .... :: ::
CCDS93 GTIAKNPETVMQFLEKLSDK-----LSERTLKDFEMIRGMKMKLN-PQNSEVMPWDPPYY
310 320 330 340 350 360
350 360 370 380 390
pF1KE4 MNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEGASA--WHEDVRLYT
. .. :: .. .: .: . . .:: . ..:::.... :. :.. : :::: .
CCDS93 SGVIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSEDVRKLA
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE4 ARDAASGEVVGKFYLDLYPREGKYGHAAC-FGLQPGCLRQDGSRQIAIAAMVANFTKPTA
. . : ..: .: :.. : : : : : .. : :..::. :. ..... :. . .
CCDS93 VVHESEG-LLGYIYCDFFQRADK-PHQDCHFTIRGGRLKEDGDYQLPVVVLMLNLPRSSR
430 440 450 460 470
460 470 480 490 500 510
pF1KE4 DAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEP
..:.:: . .:. :::.::.::.. ..... .::. ::.:.:: ..: .. . .
CCDS93 SSPTLLTPSMMENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFANDYRV
480 490 500 510 520 530
520 530 540 550 560 570
pF1KE4 LLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDA-DPAEEY
. ...:::.::. .:.... .: ::... .. :. : .:: : . . . .
CCDS93 VNQFARHYQTGQPLPKNMVSRLCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNSTTDI
540 550 560 570 580 590
580 590 600 610 620 630
pF1KE4 ARLCQE-ILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNS
. :: . :.: .:.: :.::.: : :.::.:: :.. . ... : :. .:
CCDS93 LKETQEKFYGLPYVPNTAWQLRFSHLVG-YGARYYSYLMSRAVASMVWKECFLQDP-FNR
600 610 620 630 640 650
640 650 660 670 680
pF1KE4 KVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAFLLSKGLQVGGCEPEPQVC
.: :: .: ::... :.. .: . :. : :.
CCDS93 AAGERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFVSALVSDLDLDFETFLMDSE
660 670 680 690 700 710
689 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:54:29 2016 done: Sat Nov 5 23:54:30 2016
Total Scan time: 3.720 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]