Result of FASTA (omim) for
pFN21AE4559
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4559, 684 aa
1>>>pF1KE4559 684 - 684 aa - 684 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.6013+/-0.000549; mu= -19.5073+/- 0.035
mean_var=799.1585+/-163.705, 0's: 0 Z-trim(123.4): 523 B-trim: 0 in 0/61
Lambda= 0.045369
statistics sampled from 42466 (43046) to 42466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.505), width: 16
Scan time: 12.330
The best scores are: opt bits E(85289)
NP_001844 (OMIM: 120270,600969,603932) collagen al ( 684) 5102 349.6 2.2e-95
XP_011526847 (OMIM: 120270,600969,603932) PREDICTE ( 552) 3998 277.3 1.1e-73
XP_016883155 (OMIM: 120270,600969,603932) PREDICTE ( 486) 3526 246.3 2e-64
XP_006710428 (OMIM: 120260,600204,603932,614284) P ( 689) 2422 174.2 1.4e-42
NP_001843 (OMIM: 120260,600204,603932,614284) coll ( 689) 2422 174.2 1.4e-42
XP_016855821 (OMIM: 120260,600204,603932,614284) P ( 693) 2408 173.3 2.7e-42
NP_511040 (OMIM: 120210,614134,614135) collagen al ( 678) 2394 172.4 5.1e-42
NP_001842 (OMIM: 120210,614134,614135) collagen al ( 921) 2368 170.8 2e-41
XP_016855822 (OMIM: 120260,600204,603932,614284) P ( 595) 2053 150.0 2.4e-35
XP_011539018 (OMIM: 120260,600204,603932,614284) P ( 599) 2039 149.1 4.6e-35
XP_011539017 (OMIM: 120260,600204,603932,614284) P ( 599) 2039 149.1 4.6e-35
XP_011533732 (OMIM: 120210,614134,614135) PREDICTE ( 688) 1994 146.2 3.9e-34
XP_011515191 (OMIM: 610026) PREDICTED: collagen al (1058) 1976 145.2 1.2e-33
XP_016868641 (OMIM: 610026) PREDICTED: collagen al (1264) 1976 145.3 1.3e-33
XP_011515189 (OMIM: 610026) PREDICTED: collagen al (1264) 1976 145.3 1.3e-33
XP_016865735 (OMIM: 120210,614134,614135) PREDICTE ( 748) 1968 144.5 1.3e-33
XP_016868640 (OMIM: 610026) PREDICTED: collagen al (1552) 1976 145.4 1.5e-33
XP_016868639 (OMIM: 610026) PREDICTED: collagen al (1564) 1976 145.4 1.5e-33
XP_011515188 (OMIM: 610026) PREDICTED: collagen al (1577) 1976 145.4 1.5e-33
XP_011515187 (OMIM: 610026) PREDICTED: collagen al (1588) 1976 145.4 1.5e-33
XP_011515186 (OMIM: 610026) PREDICTED: collagen al (1593) 1976 145.4 1.5e-33
XP_011515185 (OMIM: 610026) PREDICTED: collagen al (1606) 1976 145.4 1.5e-33
XP_011533731 (OMIM: 120210,614134,614135) PREDICTE ( 931) 1968 144.7 1.5e-33
NP_690848 (OMIM: 610026) collagen alpha-1(XXII) ch (1626) 1913 141.3 2.7e-32
NP_149162 (OMIM: 108300,120140,132450,150600,15121 (1418) 1851 137.2 4.1e-31
XP_016874319 (OMIM: 108300,120140,132450,150600,15 (1465) 1851 137.2 4.2e-31
NP_001835 (OMIM: 108300,120140,132450,150600,15121 (1487) 1851 137.2 4.3e-31
XP_016874318 (OMIM: 108300,120140,132450,150600,15 (1534) 1851 137.2 4.3e-31
XP_016874317 (OMIM: 108300,120140,132450,150600,15 (1535) 1851 137.2 4.3e-31
XP_016869755 (OMIM: 120215,130000) PREDICTED: coll (1715) 1838 136.4 8.4e-31
NP_001265003 (OMIM: 120215,130000) collagen alpha- (1838) 1838 136.5 8.8e-31
NP_000084 (OMIM: 120215,130000) collagen alpha-1(V (1838) 1838 136.5 8.8e-31
XP_011508875 (OMIM: 120190,130000) PREDICTED: coll (1453) 1833 136.0 9.5e-31
NP_000384 (OMIM: 120190,130000) collagen alpha-2(V (1499) 1833 136.1 9.7e-31
NP_000080 (OMIM: 120160,130060,166210,166220,16671 (1366) 1821 135.2 1.6e-30
XP_011522643 (OMIM: 114000,120150,130000,130060,16 (1398) 1788 133.1 7.1e-30
XP_016855826 (OMIM: 120280,154780,228520,603932,60 (1323) 1773 132.1 1.4e-29
NP_000079 (OMIM: 114000,120150,130000,130060,16620 (1464) 1774 132.2 1.4e-29
XP_005257115 (OMIM: 114000,120150,130000,130060,16 (1374) 1771 132.0 1.5e-29
NP_542197 (OMIM: 120280,154780,228520,603932,60484 (1690) 1773 132.2 1.6e-29
NP_001177638 (OMIM: 120280,154780,228520,603932,60 (1767) 1773 132.2 1.6e-29
NP_001845 (OMIM: 120280,154780,228520,603932,60484 (1806) 1773 132.2 1.7e-29
NP_542196 (OMIM: 120280,154780,228520,603932,60484 (1818) 1773 132.2 1.7e-29
XP_011517442 (OMIM: 608461,615155) PREDICTED: coll (1842) 1773 132.2 1.7e-29
XP_016855824 (OMIM: 120280,154780,228520,603932,60 (1855) 1773 132.2 1.7e-29
XP_016855823 (OMIM: 120280,154780,228520,603932,60 (1857) 1773 132.2 1.7e-29
XP_016884752 (OMIM: 301050,303630) PREDICTED: coll (1136) 1744 130.1 4.6e-29
NP_203699 (OMIM: 301050,303630) collagen alpha-5(I (1691) 1744 130.3 6e-29
XP_011529151 (OMIM: 301050,303630) PREDICTED: coll (1696) 1744 130.3 6e-29
XP_006717373 (OMIM: 608461,615155) PREDICTED: coll (1087) 1735 129.5 6.7e-29
>>NP_001844 (OMIM: 120270,600969,603932) collagen alpha- (684 aa)
initn: 5102 init1: 5102 opt: 5102 Z-score: 1833.3 bits: 349.6 E(85289): 2.2e-95
Smith-Waterman score: 5102; 100.0% identity (100.0% similar) in 684 aa overlap (1-684:1-684)
10 20 30 40 50 60
pF1KE4 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 GPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 GMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 GPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 GPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 AAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 RGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPG
610 620 630 640 650 660
670 680
pF1KE4 ICDTSACQGAVLGGVGEKSGSRSS
::::::::::::::::::::::::
NP_001 ICDTSACQGAVLGGVGEKSGSRSS
670 680
>>XP_011526847 (OMIM: 120270,600969,603932) PREDICTED: c (552 aa)
initn: 3998 init1: 3998 opt: 3998 Z-score: 1443.9 bits: 277.3 E(85289): 1.1e-73
Smith-Waterman score: 3998; 100.0% identity (100.0% similar) in 535 aa overlap (1-535:1-535)
10 20 30 40 50 60
pF1KE4 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 GPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 GMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 GPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 GPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEGKLAS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 AAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGD
XP_011 GRQHRVDILCFT
550
>>XP_016883155 (OMIM: 120270,600969,603932) PREDICTED: c (486 aa)
initn: 3517 init1: 3517 opt: 3526 Z-score: 1277.6 bits: 246.3 E(85289): 2e-64
Smith-Waterman score: 3526; 97.5% identity (98.3% similar) in 483 aa overlap (1-482:1-483)
10 20 30 40 50 60
pF1KE4 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 GPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 GMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 GPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ
370 380 390 400 410 420
430 440 450 460 470
pF1KE4 GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGS-RGELGPKGT
::::::::::::::::::::::::::::::::::::::::::::::: . ::. : .
XP_016 GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGEEVTLRGDGGNASP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE4 QGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQ
. :
XP_016 RLPPPC
>>XP_006710428 (OMIM: 120260,600204,603932,614284) PREDI (689 aa)
initn: 3370 init1: 1317 opt: 2422 Z-score: 885.2 bits: 174.2 E(85289): 1.4e-42
Smith-Waterman score: 2422; 51.0% identity (65.8% similar) in 681 aa overlap (1-670:1-672)
10 20 30 40 50
pF1KE4 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPG---PPGPPGPPGKPGQDGIDGEAGPPGL
::. : .: ::.:: .... : :: : :: ::::::::: ::.:::::. ::::
XP_006 MAAATA-SPRSLLVLL-QVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGK
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGK
::::::: ::: : : : ::.::::: : ::: : :: .:. : :::::: :
XP_006 AGPPGPKGEPGKAGPDGP---DGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 GLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLP--EGATDLQCP
:. :::: : : :: ::.::: : : : ::::::: ::.::.. ::..:. ::
XP_006 GFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 SICPPGPPGPPGMPGFKGPTGYKG---EQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRG
. :::: ::::. : :: .: .: . :. :: : ::: : : :.:: ::.:
XP_006 TNCPPGMKGPPGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGASGEQGIPGP---PGPQG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 LRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPG
.:: :: :: :. :: :..: : :: : :..: ::: : : ::: : :: .: :
XP_006 IRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 VAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERG
..::.: : :: .:..:.:: :.:: ::. : :: : .:: :.::. :.:: :..:
XP_006 ITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQG
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE4 RAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMG
. : : : :: :: :. : :: : : :. : : .:: : :: .: :: :: .:
XP_006 EPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQG
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE4 DPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRG
::.:::::: : ::.: : .::.: : : ::::.::: : :: ::::..: ::
XP_006 PPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRG
420 430 440 450 460 470
480 490 500 510 520 530
pF1KE4 ELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGM
: : : .: :. :::: :::::: :: : :::: :. :: :..:..:.: .. :
XP_006 EPGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPGRQGVEGRDATDQHIVDVALKM
480 490 500 510 520 530
540 550 560 570 580
pF1KE4 ISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIG---HPGARGPPGYRGPTGEL
..::.:..:. .. : :..: :: ::::::: ::. : ::: :: :: : .:..
XP_006 LQEQLAEVAVSAKRE-ALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQI
540 550 560 570 580 590
590 600 610 620 630 640
pF1KE4 GDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGL
:. ::.:..:..:: : .: : : : : : : :: . .:.:: : :: ::. :
XP_006 GNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGR
600 610 620 630 640 650
650 660 670 680
pF1KE4 PGAIGAQGTPGICDTSACQGAVLGGVGEKSGSRSS
:: : : ::.:. .:: ::
XP_006 PGLPGPVGLPGFCEPAACLGASAYASARLTEPGSIKGP
660 670 680
>>NP_001843 (OMIM: 120260,600204,603932,614284) collagen (689 aa)
initn: 3370 init1: 1317 opt: 2422 Z-score: 885.2 bits: 174.2 E(85289): 1.4e-42
Smith-Waterman score: 2422; 51.0% identity (65.8% similar) in 681 aa overlap (1-670:1-672)
10 20 30 40 50
pF1KE4 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPG---PPGPPGPPGKPGQDGIDGEAGPPGL
::. : .: ::.:: .... : :: : :: ::::::::: ::.:::::. ::::
NP_001 MAAATA-SPRSLLVLL-QVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGK
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGK
::::::: ::: : : : ::.::::: : ::: : :: .:. : :::::: :
NP_001 AGPPGPKGEPGKAGPDGP---DGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 GLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLP--EGATDLQCP
:. :::: : : :: ::.::: : : : ::::::: ::.::.. ::..:. ::
NP_001 GFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 SICPPGPPGPPGMPGFKGPTGYKG---EQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRG
. :::: ::::. : :: .: .: . :. :: : ::: : : :.:: ::.:
NP_001 TNCPPGMKGPPGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGASGEQGIPGP---PGPQG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 LRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPG
.:: :: :: :. :: :..: : :: : :..: ::: : : ::: : :: .: :
NP_001 IRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 VAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERG
..::.: : :: .:..:.:: :.:: ::. : :: : .:: :.::. :.:: :..:
NP_001 ITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQG
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE4 RAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMG
. : : : :: :: :. : :: : : :. : : .:: : :: .: :: :: .:
NP_001 EPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQG
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE4 DPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRG
::.:::::: : ::.: : .::.: : : ::::.::: : :: ::::..: ::
NP_001 PPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRG
420 430 440 450 460 470
480 490 500 510 520 530
pF1KE4 ELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGM
: : : .: :. :::: :::::: :: : :::: :. :: :..:..:.: .. :
NP_001 EPGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPGRQGVEGRDATDQHIVDVALKM
480 490 500 510 520 530
540 550 560 570 580
pF1KE4 ISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIG---HPGARGPPGYRGPTGEL
..::.:..:. .. : :..: :: ::::::: ::. : ::: :: :: : .:..
NP_001 LQEQLAEVAVSAKRE-ALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQI
540 550 560 570 580 590
590 600 610 620 630 640
pF1KE4 GDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGL
:. ::.:..:..:: : .: : : : : : : :: . .:.:: : :: ::. :
NP_001 GNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGR
600 610 620 630 640 650
650 660 670 680
pF1KE4 PGAIGAQGTPGICDTSACQGAVLGGVGEKSGSRSS
:: : : ::.:. .:: ::
NP_001 PGLPGPVGLPGFCEPAACLGASAYASARLTEPGSIKGP
660 670 680
>>XP_016855821 (OMIM: 120260,600204,603932,614284) PREDI (693 aa)
initn: 3145 init1: 1718 opt: 2408 Z-score: 880.3 bits: 173.3 E(85289): 2.7e-42
Smith-Waterman score: 2408; 50.7% identity (65.5% similar) in 685 aa overlap (1-670:1-676)
10 20 30 40 50
pF1KE4 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPG---PPGPPGPPGKPGQDGIDGEAGPPGL
::. : .: ::.:: .... : :: : :: ::::::::: ::.:::::. ::::
XP_016 MAAATA-SPRSLLVLL-QVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGK
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGK
::::::: ::: : : : ::.::::: : ::: : :: .:. : :::::: :
XP_016 AGPPGPKGEPGKAGPDGP---DGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 GLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLP--EGATDL---
:. :::: : : :: ::.::: : : : ::::::: ::.::.. ::..:.
XP_016 GFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLVR
120 130 140 150 160 170
180 190 200 210 220
pF1KE4 -QCPSICPPGPPGPPGMPGFKGPTGYKG---EQGEVGKDGEKGDPGPPGPAGLPGSVGLQ
.::. :::: ::::. : :: .: .: . :. :: : ::: : : :.::
XP_016 DECPTNCPPGMKGPPGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGASGEQGIPGP---P
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE4 GPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPK
::.:.:: :: :: :. :: :..: : :: : :..: ::: : : ::: : :: .
XP_016 GPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIR
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE4 GTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEK
: :..::.: : :: .:..:.:: :.:: ::. : :: : .:: :.::. :.::
XP_016 GPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGP
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE4 GERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQK
:..:. : : : :: :: :. : :: : : :. : : .:: : :: .: :: :
XP_016 GDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPK
360 370 380 390 400 410
410 420 430 440 450 460
pF1KE4 GSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGES
: .: ::.:::::: : ::.: : .::.: : : ::::.::: : :: ::::..
XP_016 GEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQ
420 430 440 450 460 470
470 480 490 500 510 520
pF1KE4 GSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIREL
: ::: : : .: :. :::: :::::: :: : :::: :. :: :..:..:.: ..
XP_016 GVRGEPGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPGRQGVEGRDATDQHIVDV
480 490 500 510 520 530
530 540 550 560 570 580
pF1KE4 CGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIG---HPGARGPPGYRGP
:..::.:..:. .. : :..: :: ::::::: ::. : ::: :: :: :
XP_016 ALKMLQEQLAEVAVSAKRE-ALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGA
540 550 560 570 580 590
590 600 610 620 630 640
pF1KE4 TGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPG
.:..:. ::.:..:..:: : .: : : : : : : :: . .:.:: : :: ::
XP_016 VGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPG
600 610 620 630 640 650
650 660 670 680
pF1KE4 DPGLPGAIGAQGTPGICDTSACQGAVLGGVGEKSGSRSS
. : :: : : ::.:. .:: ::
XP_016 EAGRPGLPGPVGLPGFCEPAACLGASAYASARLTEPGSIKGP
660 670 680 690
>>NP_511040 (OMIM: 120210,614134,614135) collagen alpha- (678 aa)
initn: 3341 init1: 1808 opt: 2394 Z-score: 875.4 bits: 172.4 E(85289): 5.1e-42
Smith-Waterman score: 2394; 50.8% identity (66.1% similar) in 663 aa overlap (11-667:11-663)
10 20 30 40 50 60
pF1KE4 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGP
: ::::: : :: : :::::::::: :: :::::. :: : :::
NP_511 MAWTARDRGALGLLLLGLCLCAAQRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLP
::: : ::::: ::. :: ::.::::: :: :: :. :..: : :: :. :.:.:
NP_511 PGPAGEPGKPGAPGK---PGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP
70 80 90 100 110
130 140 150 160 170 180
pF1KE4 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP
:::: :..: :: .: :: : :: :::::::::: :.. : ::. :::
NP_511 GPPGPPGTAGLPGELGRVGPVGD---PGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE4 GPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPL
: : ::.::..: : ::: :: :..:.::. : : : :. : : .::::. : .
NP_511 GRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGIV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE4 GPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP
: :..: :. : :: : :: ::.:.::: : ::::: : : .: ::. ::.:.
NP_511 GDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDT
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE4 GMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEA
:.:: ::..:.::. : ::: :. : ::. : .::::.:: :.:: ::.: .: :.
NP_511 GLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKP
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE4 GPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ
: :. : ::. : ::: : : .: :. : :: :.::. : :. :: : ::::::
NP_511 GQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPP
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE4 GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQ
:: : :::: : ::::.:: .: .: :..:::: :: :::: .:. :: : .: .
NP_511 GLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPE
420 430 440 450 460 470
490 500 510 520 530 540
pF1KE4 GPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQL
: : ::.: ::::: :.:: :. :. : : ::. ..:.:...: .:.:..:..
NP_511 GSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEM
480 490 500 510 520 530
550 560 570 580 590
pF1KE4 AAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGA---RGPPGYRGPTGELGDPGPRGN
:: :..: :. : :: :::::::::: : :: :: :: .:: : :: ::.:.
NP_511 AASLKRP-DSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGD
540 550 560 570 580 590
600 610 620 630 640 650
pF1KE4 QGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGD---PGLPGAIG
:..:..: : : :.: : : : :: .. :..: :: :::: ::.:: :
NP_511 LGEKGERGPPGRG---PNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPG
600 610 620 630 640 650
660 670 680
pF1KE4 AQGTPGICDTSACQGAVLGGVGEKSGSRSS
: ::.:. ..:
NP_511 PPGLPGFCEPASCTMQAGQRAFNKGPDP
660 670
>>NP_001842 (OMIM: 120210,614134,614135) collagen alpha- (921 aa)
initn: 5409 init1: 1808 opt: 2368 Z-score: 864.6 bits: 170.8 E(85289): 2e-41
Smith-Waterman score: 2368; 50.9% identity (66.7% similar) in 645 aa overlap (29-667:272-906)
10 20 30 40 50
pF1KE4 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLP
: :::::::::: :: :::::. :: : :
NP_001 CDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPP
250 260 270 280 290 300
60 70 80 90 100 110
pF1KE4 GPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKG
::::: : ::::: ::. :: ::.::::: :: :: :. :..: : :: :. :.:
NP_001 GPPGPAGEPGKPGAPGK---PGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRG
310 320 330 340 350
120 130 140 150 160 170
pF1KE4 LPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSIC
.::::: :..: :: .: :: : :: :::::::::: :.. : ::. :
NP_001 IPGPPGPPGTAGLPGELGRVGPVGD---PGRRGPPGPPGPPGPRGTIGFHDGDPLCPNAC
360 370 380 390 400 410
180 190 200 210 220 230
pF1KE4 PPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPG
::: : ::.::..: : ::: :: :..:.::. : : : :. : : .::::. :
NP_001 PPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITG
420 430 440 450 460 470
240 250 260 270 280 290
pF1KE4 PLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSG
.: :..: :. : :: : :: ::.:.::: : ::::: : : .: ::. ::.:
NP_001 IVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKG
480 490 500 510 520 530
300 310 320 330 340 350
pF1KE4 EPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELG
. :.:: ::..:.::. : ::: :. : ::. : .::::.:: :.:: ::.: .: :
NP_001 DTGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPG
540 550 560 570 580 590
360 370 380 390 400 410
pF1KE4 EAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPG
. : :. : ::. : ::: : : .: :. : :: :.::. : :. :: : :::::
NP_001 KPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPG
600 610 620 630 640 650
420 430 440 450 460 470
pF1KE4 PQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKG
: :: : :::: : ::::.:: .: .: :..:::: :: :::: .:. :: : .:
NP_001 PPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRG
660 670 680 690 700 710
480 490 500 510 520 530
pF1KE4 TQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIA
.: : ::.: ::::: :.:: :. :. : : ::. ..:.:...: .:.:..:
NP_001 PEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFA
720 730 740 750 760 770
540 550 560 570 580 590
pF1KE4 QLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGA---RGPPGYRGPTGELGDPGPR
..:: :..: . :. : :: :::::::::: : :: :: :: .:: : :: ::.
NP_001 EMAASLKRPDS-GATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPK
780 790 800 810 820 830
600 610 620 630 640 650
pF1KE4 GNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGD---PGLPGA
:. :..:..: : ::.: : : : :: .. :..: :: :::: ::.::
NP_001 GDLGEKGERGPPGR---GPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGP
840 850 860 870 880 890
660 670 680
pF1KE4 IGAQGTPGICDTSACQGAVLGGVGEKSGSRSS
: : ::.:. ..:
NP_001 PGPPGLPGFCEPASCTMQAGQRAFNKGPDP
900 910 920
>>XP_016855822 (OMIM: 120260,600204,603932,614284) PREDI (595 aa)
initn: 3370 init1: 1317 opt: 2053 Z-score: 755.5 bits: 150.0 E(85289): 2.4e-35
Smith-Waterman score: 2053; 49.7% identity (65.4% similar) in 581 aa overlap (98-670:2-578)
70 80 90 100 110 120
pF1KE4 GKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAG
: :: .:. : :::::: : :. :::: :
XP_016 MGIPGVKGQPGLPGPPGLPGPGFAGPPGPPG
10 20 30
130 140 150 160 170 180
pF1KE4 VSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLP--EGATDLQCPSICPPGPPGP
: :: ::.::: : : : ::::::: ::.::.. ::..:. ::. :::: ::
XP_016 PVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGP
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE4 PGMPGFKGPTGYKG---EQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGP
::. : :: .: .: . :. :: : ::: : : :.:: ::.:.:: :: ::
XP_016 PGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGASGEQGIPGP---PGPQGIRGYPGMAGP
100 110 120 130 140
250 260 270 280 290 300
pF1KE4 PGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGM
:. :: :..: : :: : :..: ::: : : ::: : :: .: :..::.: :
XP_016 KGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGP
150 160 170 180 190 200
310 320 330 340 350 360
pF1KE4 PGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGP
:: .:..:.:: :.:: ::. : :: : .:: :.::. :.:: :..:. : : :
XP_016 PGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGF
210 220 230 240 250 260
370 380 390 400 410 420
pF1KE4 SGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGL
:: :: :. : :: : : :. : : .:: : :: .: :: :: .: ::.::::::
XP_016 SGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGL
270 280 290 300 310 320
430 440 450 460 470 480
pF1KE4 RGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGP
: ::.: : .::.: : : ::::.::: : :: ::::..: ::: : : .:
XP_016 PGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGD
330 340 350 360 370 380
490 500 510 520 530 540
pF1KE4 NGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAA
:. :::: :::::: :: : :::: :. :: :..:..:.: .. :..::.:..:.
XP_016 AGAPGVQGYPGPPGPRGLAGNRGVPGQPGRQGVEGRDATDQHIVDVALKMLQEQLAEVAV
390 400 410 420 430 440
550 560 570 580 590
pF1KE4 HLRKPLAPGSIGRPGPAGPPGPPGPPGSIG---HPGARGPPGYRGPTGELGDPGPRGNQG
.. : :..: :: ::::::: ::. : ::: :: :: : .:..:. ::.:..:
XP_016 SAKRE-ALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRG
450 460 470 480 490 500
600 610 620 630 640 650
pF1KE4 DRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTP
..:: : .: : : : : : : :: . .:.:: : :: ::. : :: : : :
XP_016 EKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLP
510 520 530 540 550 560
660 670 680
pF1KE4 GICDTSACQGAVLGGVGEKSGSRSS
:.:. .:: ::
XP_016 GFCEPAACLGASAYASARLTEPGSIKGP
570 580 590
>>XP_011539018 (OMIM: 120260,600204,603932,614284) PREDI (599 aa)
initn: 3696 init1: 1485 opt: 2039 Z-score: 750.5 bits: 149.1 E(85289): 4.6e-35
Smith-Waterman score: 2039; 49.4% identity (65.1% similar) in 585 aa overlap (98-670:2-582)
70 80 90 100 110 120
pF1KE4 GKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAG
: :: .:. : :::::: : :. :::: :
XP_011 MGIPGVKGQPGLPGPPGLPGPGFAGPPGPPG
10 20 30
130 140 150 160 170 180
pF1KE4 VSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLP--EGATDL----QCPSICPPG
: :: ::.::: : : : ::::::: ::.::.. ::..:. .::. ::::
XP_011 PVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLVRDECPTNCPPG
40 50 60 70 80 90
190 200 210 220 230
pF1KE4 PPGPPGMPGFKGPTGYKG---EQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPG
::::. : :: .: .: . :. :: : ::: : : :.:: ::.:.:: ::
XP_011 MKGPPGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGASGEQGIPGP---PGPQGIRGYPG
100 110 120 130 140
240 250 260 270 280 290
pF1KE4 PLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSG
:: :. :: :..: : :: : :..: ::: : : ::: : :: .: :..::.:
XP_011 MAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQGITGPKG
150 160 170 180 190 200
300 310 320 330 340 350
pF1KE4 EPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELG
: :: .:..:.:: :.:: ::. : :: : .:: :.::. :.:: :..:. : :
XP_011 ATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQG
210 220 230 240 250 260
360 370 380 390 400 410
pF1KE4 EAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPG
: :: :: :. : :: : : :. : : .:: : :: .: :: :: .: ::.::
XP_011 LPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPG
270 280 290 300 310 320
420 430 440 450 460 470
pF1KE4 PQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKG
:::: : ::.: : .::.: : : ::::.::: : :: ::::..: ::: : :
XP_011 PQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPG
330 340 350 360 370 380
480 490 500 510 520 530
pF1KE4 TQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIA
.: :. :::: :::::: :: : :::: :. :: :..:..:.: .. :..::.:
XP_011 PSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPGRQGVEGRDATDQHIVDVALKMLQEQLA
390 400 410 420 430 440
540 550 560 570 580 590
pF1KE4 QLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIG---HPGARGPPGYRGPTGELGDPGPR
..:. .. : :..: :: ::::::: ::. : ::: :: :: : .:..:. ::.
XP_011 EVAVSAKRE-ALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPK
450 460 470 480 490 500
600 610 620 630 640 650
pF1KE4 GNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGA
:..:..:: : .: : : : : : : :: . .:.:: : :: ::. : :: :
XP_011 GKRGEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGP
510 520 530 540 550 560
660 670 680
pF1KE4 QGTPGICDTSACQGAVLGGVGEKSGSRSS
: ::.:. .:: ::
XP_011 VGLPGFCEPAACLGASAYASARLTEPGSIKGP
570 580 590
684 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:56:23 2016 done: Sat Nov 5 23:56:25 2016
Total Scan time: 12.330 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]