Result of FASTA (ccds) for
pFN21AE4554
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4554, 669 aa
1>>>pF1KE4554 669 - 669 aa - 669 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6342+/-0.00104; mu= 17.3104+/- 0.063
mean_var=61.8967+/-12.662, 0's: 0 Z-trim(103.9): 14 B-trim: 269 in 1/49
Lambda= 0.163020
statistics sampled from 7640 (7644) to 7640 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.235), width: 16
Scan time: 3.350
The best scores are: opt bits E(32554)
CCDS9878.2 GALC gene_id:2581|Hs108|chr14 ( 685) 4572 1084.3 0
CCDS55937.1 GALC gene_id:2581|Hs108|chr14 ( 659) 4251 1008.8 0
CCDS55936.1 GALC gene_id:2581|Hs108|chr14 ( 662) 4101 973.5 0
>>CCDS9878.2 GALC gene_id:2581|Hs108|chr14 (685 aa)
initn: 4572 init1: 4572 opt: 4572 Z-score: 5803.8 bits: 1084.3 E(32554): 0
Smith-Waterman score: 4572; 99.7% identity (99.9% similar) in 669 aa overlap (1-669:17-685)
10 20 30 40
pF1KE4 MTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA
::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE4 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE4 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE4 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE4 VGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCIRPFLPYFNVSQQFATFVLKGSFSEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 VGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCIRPFLPYFNVSQQFATFVLKGSFSEI
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE4 PELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPLP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KE4 PKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQRPIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQRPIT
490 500 510 520 530 540
530 540 550 560 570 580
pF1KE4 WAADASNTISIIGDYNWTNLTTKCDVYIETPDTGGVFIAGRVNKGGILIRSARGIFFWIF
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS98 WAADASNTISIIGDYNWTNLTIKCDVYIETPDTGGVFIAGRVNKGGILIRSARGIFFWIF
550 560 570 580 590 600
590 600 610 620 630 640
pF1KE4 ANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLTIKGHFASGMLNDKSLWTDIPVNFPK
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS98 ANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLTIKGHFTSGMLNDKSLWTDIPVNFPK
610 620 630 640 650 660
650 660
pF1KE4 NGWAAIGTHSFEFAQFDNFLVEATR
:::::::::::::::::::::::::
CCDS98 NGWAAIGTHSFEFAQFDNFLVEATR
670 680
>>CCDS55937.1 GALC gene_id:2581|Hs108|chr14 (659 aa)
initn: 4251 init1: 4251 opt: 4251 Z-score: 5396.1 bits: 1008.8 E(32554): 0
Smith-Waterman score: 4251; 99.7% identity (99.8% similar) in 620 aa overlap (50-669:40-659)
20 30 40 50 60 70
pF1KE4 LLAPGGAYVLDDSDGLGREFDGIGAVSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASL
::::::::::::::::::::::::::::::
CCDS55 THGPLPLADLGIHLPCVKVLHQVTPEEKPAATSRLLVNYPEPYRSQILDYLFKPNFGASL
10 20 30 40 50 60
80 90 100 110 120 130
pF1KE4 HILKVEIGGDGQTTDGTEPSHMHYALDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HILKVEIGGDGQTTDGTEPSHMHYALDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPG
70 80 90 100 110 120
140 150 160 170 180 190
pF1KE4 WLGKGFDWPYVNLQLTAYYVVTWIVGAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WLGKGFDWPYVNLQLTAYYVVTWIVGAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNY
130 140 150 160 170 180
200 210 220 230 240 250
pF1KE4 QGLQRVKIIASDNLWESISASMLLDAELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QGLQRVKIIASDNLWESISASMLLDAELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSED
190 200 210 220 230 240
260 270 280 290 300 310
pF1KE4 FSTLNSDMGAGCWGRILNQNYINGYMTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FSTLNSDMGAGCWGRILNQNYINGYMTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHY
250 260 270 280 290 300
320 330 340 350 360 370
pF1KE4 VVESPVWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VVESPVWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCI
310 320 330 340 350 360
380 390 400 410 420 430
pF1KE4 RPFLPYFNVSQQFATFVLKGSFSEIPELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPFLPYFNVSQQFATFVLKGSFSEIPELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFT
370 380 390 400 410 420
440 450 460 470 480 490
pF1KE4 LSLHEDELFTLTTLTTGRKGSYPLPPKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSLHEDELFTLTTLTTGRKGSYPLPPKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFE
430 440 450 460 470 480
500 510 520 530 540 550
pF1KE4 YFTNIEDPGEHHFTLRQVLNQRPITWAADASNTISIIGDYNWTNLTTKCDVYIETPDTGG
:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS55 YFTNIEDPGEHHFTLRQVLNQRPITWAADASNTISIIGDYNWTNLTIKCDVYIETPDTGG
490 500 510 520 530 540
560 570 580 590 600 610
pF1KE4 VFIAGRVNKGGILIRSARGIFFWIFANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFIAGRVNKGGILIRSARGIFFWIFANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLT
550 560 570 580 590 600
620 630 640 650 660
pF1KE4 IKGHFASGMLNDKSLWTDIPVNFPKNGWAAIGTHSFEFAQFDNFLVEATR
:::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IKGHFTSGMLNDKSLWTDIPVNFPKNGWAAIGTHSFEFAQFDNFLVEATR
610 620 630 640 650
>>CCDS55936.1 GALC gene_id:2581|Hs108|chr14 (662 aa)
initn: 4408 init1: 4101 opt: 4101 Z-score: 5205.4 bits: 973.5 E(32554): 0
Smith-Waterman score: 4366; 96.3% identity (96.4% similar) in 669 aa overlap (1-669:17-662)
10 20 30 40
pF1KE4 MTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA
::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA
::::: ::::::::::::::::::::::::::::::::
CCDS55 VSGGG-----------------------PNFGASLHILKVEIGGDGQTTDGTEPSHMHYA
70 80 90
110 120 130 140 150 160
pF1KE4 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV
100 110 120 130 140 150
170 180 190 200 210 220
pF1KE4 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE4 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE4 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT
280 290 300 310 320 330
350 360 370 380 390 400
pF1KE4 VGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCIRPFLPYFNVSQQFATFVLKGSFSEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCIRPFLPYFNVSQQFATFVLKGSFSEI
340 350 360 370 380 390
410 420 430 440 450 460
pF1KE4 PELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPLP
400 410 420 430 440 450
470 480 490 500 510 520
pF1KE4 PKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQRPIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQRPIT
460 470 480 490 500 510
530 540 550 560 570 580
pF1KE4 WAADASNTISIIGDYNWTNLTTKCDVYIETPDTGGVFIAGRVNKGGILIRSARGIFFWIF
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS55 WAADASNTISIIGDYNWTNLTIKCDVYIETPDTGGVFIAGRVNKGGILIRSARGIFFWIF
520 530 540 550 560 570
590 600 610 620 630 640
pF1KE4 ANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLTIKGHFASGMLNDKSLWTDIPVNFPK
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS55 ANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLTIKGHFTSGMLNDKSLWTDIPVNFPK
580 590 600 610 620 630
650 660
pF1KE4 NGWAAIGTHSFEFAQFDNFLVEATR
:::::::::::::::::::::::::
CCDS55 NGWAAIGTHSFEFAQFDNFLVEATR
640 650 660
669 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:36:24 2016 done: Mon Nov 7 18:36:24 2016
Total Scan time: 3.350 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]