FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4550, 657 aa
  1>>>pF1KE4550 657 - 657 aa - 657 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4195+/-0.000989; mu= 14.1163+/- 0.060
 mean_var=89.7504+/-17.468, 0's: 0 Z-trim(105.9): 18  B-trim: 0 in 0/51
 Lambda= 0.135380
 statistics sampled from 8662 (8670) to 8662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS45820.1 THOC1 gene_id:9984|Hs108|chr18         ( 657) 4367 863.5       0


>>CCDS45820.1 THOC1 gene_id:9984|Hs108|chr18              (657 aa)
 initn: 4367 init1: 4367 opt: 4367  Z-score: 4611.1  bits: 863.5 E(32554):    0
Smith-Waterman score: 4367; 100.0% identity (100.0% similar) in 657 aa overlap (1-657:1-657)

               10        20        30        40        50        60
pF1KE4 MSPTPPLFSLPEARTRFTKSTREALNNKNIKPLLSTFSQVPGSENEKKCTLDQAFRGILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSPTPPLFSLPEARTRFTKSTREALNNKNIKPLLSTFSQVPGSENEKKCTLDQAFRGILE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAPE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 DFLGKGPTKKILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADPENMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DFLGKGPTKKILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADPENMV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 KTGEDEDEEDNDALLKENESPDVRRDKPVTGEQIEVFANKLGEQWKILAPYLEMKDSEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KTGEDEDEEDNDALLKENESPDVRRDKPVTGEQIEVFANKLGEQWKILAPYLEMKDSEIR
              550       560       570       580       590       600

              610       620       630       640       650       
pF1KE4 QIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETNS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETNS
              610       620       630       640       650       




657 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:01:51 2016 done: Sun Nov  6 00:01:52 2016
 Total Scan time:  2.510 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]