FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4527, 576 aa
  1>>>pF1KE4527 576 - 576 aa - 576 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3877+/-0.000882; mu= 5.4431+/- 0.053
 mean_var=183.8370+/-36.682, 0's: 0 Z-trim(112.6): 8  B-trim: 26 in 1/51
 Lambda= 0.094593
 statistics sampled from 13325 (13328) to 13325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.409), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS11592.1 COIL gene_id:8161|Hs108|chr17          ( 576) 3787 529.2 5.2e-150


>>CCDS11592.1 COIL gene_id:8161|Hs108|chr17               (576 aa)
 initn: 3787 init1: 3787 opt: 3787  Z-score: 2806.7  bits: 529.2 E(32554): 5.2e-150
Smith-Waterman score: 3787; 100.0% identity (100.0% similar) in 576 aa overlap (1-576:1-576)

               10        20        30        40        50        60
pF1KE4 MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTVGLFAGRGRPGPGLSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTVGLFAGRGRPGPGLSSQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 TAGAAGWRRSGSNGGGQAPGASPSVSLPASLGRGWGREENLFSWKGAKGRGMRGRGRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TAGAAGWRRSGSNGGGQAPGASPSVSLPASLGRGWGREENLFSWKGAKGRGMRGRGRGRG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 HPVSCVVNRSTDNQRQQQLNDVVKNSSTIIQNPVETPKKDYSLLPLLAAAPQVGEKIAFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HPVSCVVNRSTDNQRQQQLNDVVKNSSTIIQNPVETPKKDYSLLPLLAAAPQVGEKIAFK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 LLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFDLVYHNENGAEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFDLVYHNENGAEVV
              490       500       510       520       530       540

              550       560       570      
pF1KE4 EYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA
       ::::::::::::::::::::::::::::::::::::
CCDS11 EYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA
              550       560       570      




576 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:13:41 2016 done: Sun Nov  6 00:13:42 2016
 Total Scan time:  3.620 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]