Result of FASTA (ccds) for
pFN21AE4512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4512, 540 aa
1>>>pF1KE4512 540 - 540 aa - 540 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8067+/-0.000897; mu= -1.4918+/- 0.054
mean_var=258.9895+/-51.494, 0's: 0 Z-trim(115.3): 9 B-trim: 0 in 0/52
Lambda= 0.079695
statistics sampled from 15899 (15906) to 15899 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.489), width: 16
Scan time: 3.710
The best scores are: opt bits E(32554)
CCDS953.1 ECM1 gene_id:1893|Hs108|chr1 ( 540) 3915 463.2 3.4e-130
CCDS55632.1 ECM1 gene_id:1893|Hs108|chr1 ( 567) 3426 407.0 3e-113
CCDS954.1 ECM1 gene_id:1893|Hs108|chr1 ( 415) 1830 223.4 4e-58
>>CCDS953.1 ECM1 gene_id:1893|Hs108|chr1 (540 aa)
initn: 3915 init1: 3915 opt: 3915 Z-score: 2450.9 bits: 463.2 E(32554): 3.4e-130
Smith-Waterman score: 3915; 99.6% identity (99.8% similar) in 540 aa overlap (1-540:1-540)
10 20 30 40 50 60
pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 QHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDISRVTPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS95 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE
490 500 510 520 530 540
>>CCDS55632.1 ECM1 gene_id:1893|Hs108|chr1 (567 aa)
initn: 3417 init1: 3417 opt: 3426 Z-score: 2146.7 bits: 407.0 E(32554): 3e-113
Smith-Waterman score: 3842; 94.7% identity (94.9% similar) in 567 aa overlap (1-540:1-567)
10 20 30 40 50 60
pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
10 20 30 40 50 60
70 80 90
pF1KE4 DSSQHGPPFEGQSQ---------------------------VQPPPSQEATPLQQEKLLP
::::::::::::: :::::::::::::::::::
CCDS55 DSSQHGPPFEGQSGKEGRGPRPHSQPWLGERVGCSHIPPSIVQPPPSQEATPLQQEKLLP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE4 AQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQ
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS55 AQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQ
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE4 DRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE4 EIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEE
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE4 APQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 APQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE4 ELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRD
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE4 ECFARRAPYPNYDRDILTIDISRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLP
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS55 ECFARRAPYPNYDRDILTIDIGRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLP
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE4 FPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVALVSGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVALVSGD
490 500 510 520 530 540
520 530 540
pF1KE4 TENAKGQGEQGSTGGTNISSTSEPKEE
:::::::::::::::::::::::::::
CCDS55 TENAKGQGEQGSTGGTNISSTSEPKEE
550 560
>>CCDS954.1 ECM1 gene_id:1893|Hs108|chr1 (415 aa)
initn: 1829 init1: 1791 opt: 1830 Z-score: 1156.9 bits: 223.4 E(32554): 4e-58
Smith-Waterman score: 2728; 76.5% identity (76.7% similar) in 540 aa overlap (1-540:1-415)
10 20 30 40 50 60
pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 QHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWE--
190 200 210 220 230
250 260 270 280 290 300
pF1KE4 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP
CCDS95 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE4 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK
CCDS95 ------------------------------------------------------------
370 380 390 400 410 420
pF1KE4 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDISRVTPN
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS95 ---DTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTPN
240 250 260 270 280 290
430 440 450 460 470 480
pF1KE4 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW
300 310 320 330 340 350
490 500 510 520 530 540
pF1KE4 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE
360 370 380 390 400 410
540 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 00:20:35 2016 done: Sun Nov 6 00:20:35 2016
Total Scan time: 3.710 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]