Result of FASTA (ccds) for
pFN21AE4464
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4464, 486 aa
1>>>pF1KE4464 486 - 486 aa - 486 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2453+/-0.000992; mu= 13.2483+/- 0.060
mean_var=76.5477+/-15.196, 0's: 0 Z-trim(104.9): 19 B-trim: 0 in 0/48
Lambda= 0.146591
statistics sampled from 8158 (8166) to 8158 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.251), width: 16
Scan time: 3.040
The best scores are: opt bits E(32554)
CCDS6864.1 MAPKAP1 gene_id:79109|Hs108|chr9 ( 486) 3186 683.5 1.4e-196
CCDS35140.1 MAPKAP1 gene_id:79109|Hs108|chr9 ( 522) 2130 460.2 2.4e-129
CCDS35139.1 MAPKAP1 gene_id:79109|Hs108|chr9 ( 475) 2121 458.3 8.4e-129
CCDS48020.1 MAPKAP1 gene_id:79109|Hs108|chr9 ( 323) 2115 456.9 1.4e-128
CCDS35141.1 MAPKAP1 gene_id:79109|Hs108|chr9 ( 330) 1073 236.6 3.2e-62
>>CCDS6864.1 MAPKAP1 gene_id:79109|Hs108|chr9 (486 aa)
initn: 3186 init1: 3186 opt: 3186 Z-score: 3643.0 bits: 683.5 E(32554): 1.4e-196
Smith-Waterman score: 3186; 100.0% identity (100.0% similar) in 486 aa overlap (1-486:1-486)
10 20 30 40 50 60
pF1KE4 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 MKEILLKAVKRRKGSQKVSGSRADGVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MKEILLKAVKRRKGSQKVSGSRADGVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 TTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 YLSNHDYKHLYFESDAATVNEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFSFQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YLSNHDYKHLYFESDAATVNEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFSFQKE
430 440 450 460 470 480
pF1KE4 KKSGQQ
::::::
CCDS68 KKSGQQ
>>CCDS35140.1 MAPKAP1 gene_id:79109|Hs108|chr9 (522 aa)
initn: 2114 init1: 2114 opt: 2130 Z-score: 2435.5 bits: 460.2 E(32554): 2.4e-129
Smith-Waterman score: 3077; 93.1% identity (93.1% similar) in 518 aa overlap (1-482:1-518)
10 20 30 40 50 60
pF1KE4 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVT
250 260 270 280 290 300
310 320
pF1KE4 MKEILLKAVKRRKGSQKVSG------------------------------------SRAD
:::::::::::::::::::: ::::
CCDS35 MKEILLKAVKRRKGSQKVSGPQYRLEKQSEPNVAVDLDSTLESQSAWEFCLVRENSSRAD
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE4 GVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKAS
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE4 TKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLTYLSNHDYKHLYFESDAATVNEIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLTYLSNHDYKHLYFESDAATVNEIVL
430 440 450 460 470 480
450 460 470 480
pF1KE4 KVNYILESRASTARADYFAQKQRKLNRRTSFSFQKEKKSGQQ
::::::::::::::::::::::::::::::::::::::
CCDS35 KVNYILESRASTARADYFAQKQRKLNRRTSFSFQKEKKSGQQ
490 500 510 520
>>CCDS35139.1 MAPKAP1 gene_id:79109|Hs108|chr9 (475 aa)
initn: 2869 init1: 2114 opt: 2121 Z-score: 2425.9 bits: 458.3 E(32554): 8.4e-129
Smith-Waterman score: 2859; 91.8% identity (94.9% similar) in 486 aa overlap (1-486:1-475)
10 20 30 40 50 60
pF1KE4 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 MKEILLKAVKRRKGSQKVSGSRADGVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRF
:::::::::::::::::::: . .:..:. ..:. :. :. . .: .:
CCDS35 MKEILLKAVKRRKGSQKVSGPQYR--LEKQSEPNVAV--DLDSTLESQS-------AWEF
310 320 330 340
370 380 390 400 410 420
pF1KE4 TTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLT
. .:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CLVRENSISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLT
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE4 YLSNHDYKHLYFESDAATVNEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFSFQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YLSNHDYKHLYFESDAATVNEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFSFQKE
410 420 430 440 450 460
pF1KE4 KKSGQQ
::::::
CCDS35 KKSGQQ
470
>>CCDS48020.1 MAPKAP1 gene_id:79109|Hs108|chr9 (323 aa)
initn: 2115 init1: 2115 opt: 2115 Z-score: 2421.8 bits: 456.9 E(32554): 1.4e-128
Smith-Waterman score: 2115; 99.7% identity (100.0% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KE4 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 VDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 MKEILLKAVKRRKGSQKVSGSRADGVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRF
::::::::::::::::::::.
CCDS48 MKEILLKAVKRRKGSQKVSGACD
310 320
>>CCDS35141.1 MAPKAP1 gene_id:79109|Hs108|chr9 (330 aa)
initn: 1073 init1: 1073 opt: 1073 Z-score: 1230.6 bits: 236.6 E(32554): 3.2e-62
Smith-Waterman score: 1820; 89.1% identity (89.1% similar) in 330 aa overlap (193-486:1-330)
170 180 190 200 210 220
pF1KE4 FDGKGHVGTTATKKIDVYLPLHSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGREPK
::::::::::::::::::::::::::::::
CCDS35 MTVVTMASARVQDLIGLICWQYTSEGREPK
10 20 30
230 240 250 260 270 280
pF1KE4 LNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVR
40 50 60 70 80 90
290 300 310 320
pF1KE4 INAAHGFSLIQVDNTKVTMKEILLKAVKRRKGSQKVSG----------------------
::::::::::::::::::::::::::::::::::::::
CCDS35 INAAHGFSLIQVDNTKVTMKEILLKAVKRRKGSQKVSGPQYRLEKQSEPNVAVDLDSTLE
100 110 120 130 140 150
330 340 350 360
pF1KE4 --------------SRADGVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRFTTDVQL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SQSAWEFCLVRENSSRADGVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRFTTDVQL
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE4 GISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLTYLSNHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLTYLSNHD
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE4 YKHLYFESDAATVNEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFSFQKEKKSGQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YKHLYFESDAATVNEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFSFQKEKKSGQQ
280 290 300 310 320 330
486 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 00:56:30 2016 done: Sun Nov 6 00:56:31 2016
Total Scan time: 3.040 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]