Result of FASTA (ccds) for
pFN21AE4462
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4462, 479 aa
1>>>pF1KE4462 479 - 479 aa - 479 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2205+/-0.00082; mu= 18.4493+/- 0.049
mean_var=68.3732+/-13.432, 0's: 0 Z-trim(106.9): 13 B-trim: 4 in 1/49
Lambda= 0.155107
statistics sampled from 9222 (9229) to 9222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.283), width: 16
Scan time: 2.390
The best scores are: opt bits E(32554)
CCDS46609.1 CTSA gene_id:5476|Hs108|chr20 ( 480) 3278 742.6 2.1e-214
CCDS13385.2 CTSA gene_id:5476|Hs108|chr20 ( 498) 3278 742.7 2.1e-214
CCDS54467.1 CTSA gene_id:5476|Hs108|chr20 ( 481) 2494 567.2 1.3e-161
CCDS5419.1 CPVL gene_id:54504|Hs108|chr7 ( 476) 555 133.3 5.5e-31
>>CCDS46609.1 CTSA gene_id:5476|Hs108|chr20 (480 aa)
initn: 3240 init1: 3240 opt: 3278 Z-score: 3962.8 bits: 742.6 E(32554): 2.1e-214
Smith-Waterman score: 3278; 99.8% identity (99.8% similar) in 480 aa overlap (1-479:1-480)
10 20 30 40 50
pF1KE4 MIRAAPPPLFLLLLLLLL-VSWASRGEAAPDQDEIQRLPGLAKQPSFRQYSGYLKGSGSK
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS46 MIRAAPPPLFLLLLLLLLLVSWASRGEAAPDQDEIQRLPGLAKQPSFRQYSGYLKGSGSK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 HLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 ANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 GIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 CSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQD
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE4 LGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWD
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE4 MCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKME
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE4 VQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQPY
430 440 450 460 470 480
>>CCDS13385.2 CTSA gene_id:5476|Hs108|chr20 (498 aa)
initn: 3240 init1: 3240 opt: 3278 Z-score: 3962.6 bits: 742.7 E(32554): 2.1e-214
Smith-Waterman score: 3278; 99.8% identity (99.8% similar) in 480 aa overlap (1-479:19-498)
10 20 30 40
pF1KE4 MIRAAPPPLFLLLLLLLL-VSWASRGEAAPDQDEIQRLPGLA
:::::::::::::::::: :::::::::::::::::::::::
CCDS13 MTSSPRAPPGEQGRGGAEMIRAAPPPLFLLLLLLLLLVSWASRGEAAPDQDEIQRLPGLA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 KQPSFRQYSGYLKGSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KQPSFRQYSGYLKGSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 VQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE4 LFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE4 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCA
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE4 GGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLN
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE4 NPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMA
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE4 CNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTD
430 440 450 460 470 480
470
pF1KE4 KPLAAFTMFSRFLNKQPY
::::::::::::::::::
CCDS13 KPLAAFTMFSRFLNKQPY
490
>>CCDS54467.1 CTSA gene_id:5476|Hs108|chr20 (481 aa)
initn: 2595 init1: 2467 opt: 2494 Z-score: 3014.7 bits: 567.2 E(32554): 1.3e-161
Smith-Waterman score: 3110; 96.2% identity (96.2% similar) in 480 aa overlap (1-479:19-481)
10 20 30 40
pF1KE4 MIRAAPPPLFLLLLLLLL-VSWASRGEAAPDQDEIQRLPGLA
:::::::::::::::::: :::::::::::::::::::::::
CCDS54 MTSSPRAPPGEQGRGGAEMIRAAPPPLFLLLLLLLLLVSWASRGEAAPDQDEIQRLPGLA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 KQPSFRQYSGYLKGSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KQPSFRQYSGYLKGSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 VQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFR
:::::::::::::::::::::::::::::::::::::::::::
CCDS54 -----------------IANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFR
130 140 150 160
170 180 190 200 210 220
pF1KE4 LFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE4 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCA
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE4 GGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLN
290 300 310 320 330 340
350 360 370 380 390 400
pF1KE4 NPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMA
350 360 370 380 390 400
410 420 430 440 450 460
pF1KE4 CNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTD
410 420 430 440 450 460
470
pF1KE4 KPLAAFTMFSRFLNKQPY
::::::::::::::::::
CCDS54 KPLAAFTMFSRFLNKQPY
470 480
>>CCDS5419.1 CPVL gene_id:54504|Hs108|chr7 (476 aa)
initn: 532 init1: 337 opt: 555 Z-score: 669.8 bits: 133.3 E(32554): 5.5e-31
Smith-Waterman score: 667; 29.9% identity (60.4% similar) in 455 aa overlap (37-474:66-466)
10 20 30 40 50 60
pF1KE4 PPLFLLLLLLLLVSWASRGEAAPDQDEIQRLPGLAKQPSFRQYSGYL--KGSGSKHLHYW
.::: ....:.:.: . . ...: .:
CCDS54 KGDSGQPLFLTPYIEAGKIQKGRELSLVGPFPGL----NMKSYAGFLTVNKTYNSNLFFW
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE4 FVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLY
: .: .::..::::::.:::: ::. ::..::::..: . .::. . :. ..::
CCDS54 FFPAQIQPEDAPVVLWLQGGPGGSSMFGLFVEHGPYVVTSN-MTLRDRDFPWTTTLSMLY
100 110 120 130 140 150
130 140 150 160 170 180
pF1KE4 LESPAGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYI
...:.:.:::..:: ::.:. .::.. . :: .::..::::::: ...::::::: :.
CCDS54 IDNPVGTGFSFTDDTHGYAVNEDDVARDLYSALIQFFQIFPEYKNNDFYVTGESYAGKYV
160 170 180 190 200 210
190 200 210 220 230
pF1KE4 PTLAVLVMQ-DP----SMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTH
:..: :. . .: ..::.:.:.:.: :. :. .. . : : ::: .. . .: .
CCDS54 PAIAHLIHSLNPVREVKINLNGIAIGDGYSDPESIIGGYAEFLYQIGLLDEKQKKYFQKQ
220 230 240 250 260 270
240 250 260 270 280 290
pF1KE4 CCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQ
: ::. .... . . :. .: . ::.:. :
CCDS54 CH-------------ECIEHIRKQNWFEAFEILD--KLLDGDLTSDPSYFQN------VT
280 290 300
300 310 320 330 340 350
pF1KE4 DLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQW
.: .. : : : . .:. : ::.:... .:
CCDS54 GCSNYYNFL-----------------RCTEP-EDQLYYVKFLSLPEVRQAIHVGNQT---
310 320 330 340
360 370 380 390 400
pF1KE4 DMCNFLVNLQYRR--LYRSMNSQYLKLLSSQKYQILLYNGDVDMAC-------NFMGDEW
. . . .: : .:.. ..... :..:.:::..:. ..:: .:
CCDS54 -FNDGTIVEKYLREDTVQSVKPWLTEIMNN--YKVLIYNGQLDIIVAAALTERSLMGMDW
350 360 370 380 390 400
410 420 430 440 450 460
pF1KE4 FVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTM
.. .: : .. : . .:: ..::.... . . . :.:.::..: :.:: :: :
CCDS54 KGSQEYKKAE--KKVWKIFKSDS--EVAGYIRQAGDFHQVIIRGGGHILPYDQPLRAFDM
410 420 430 440 450 460
470
pF1KE4 FSRFLNKQPY
..::.
CCDS54 INRFIYGKGWDPYVG
470
479 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 00:30:58 2016 done: Sun Nov 6 00:30:59 2016
Total Scan time: 2.390 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]