FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4461, 477 aa
  1>>>pF1KE4461 477 - 477 aa - 477 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6653+/-0.000752; mu= 16.5695+/- 0.045
 mean_var=78.7375+/-16.453, 0's: 0 Z-trim(109.7): 20  B-trim: 0 in 0/49
 Lambda= 0.144538
 statistics sampled from 11045 (11061) to 11045 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.34), width:  16
 Scan time:  3.600

The best scores are:                                      opt bits E(32554)
CCDS1221.1 PPOX gene_id:5498|Hs108|chr1            ( 477) 3169 670.3 1.3e-192


>>CCDS1221.1 PPOX gene_id:5498|Hs108|chr1                 (477 aa)
 initn: 3169 init1: 3169 opt: 3169  Z-score: 3571.7  bits: 670.3 E(32554): 1.3e-192
Smith-Waterman score: 3169; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477)

               10        20        30        40        50        60
pF1KE4 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 PFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 RSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 ETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 PGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIP
              370       380       390       400       410       420

              430       440       450       460       470       
pF1KE4 QYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSVLGTEPNS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSVLGTEPNS
              430       440       450       460       470       




477 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:57:51 2016 done: Sun Nov  6 00:57:52 2016
 Total Scan time:  3.600 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]