FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4454, 474 aa
  1>>>pF1KE4454 474 - 474 aa - 474 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6869+/-0.000926; mu= 15.6597+/- 0.056
 mean_var=66.2122+/-13.094, 0's: 0 Z-trim(104.4): 20  B-trim: 0 in 0/49
 Lambda= 0.157618
 statistics sampled from 7892 (7895) to 7892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.243), width:  16
 Scan time:  3.250

The best scores are:                                      opt bits E(32554)
CCDS13245.1 GSS gene_id:2937|Hs108|chr20           ( 474) 3042 700.9 7.7e-202


>>CCDS13245.1 GSS gene_id:2937|Hs108|chr20                (474 aa)
 initn: 3042 init1: 3042 opt: 3042  Z-score: 3737.2  bits: 700.9 E(32554): 7.7e-202
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474)

               10        20        30        40        50        60
pF1KE4 MATNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MATNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LLEQAYAVQMDFNLLVDAVSQNAAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLEQAYAVQMDFNLLVDAVSQNAAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAVHRHVLSVLSKTKEAGKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAVHRHVLSVLSKTKEAGKIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SNNPSKGLALGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIENELLARNIHVIRRTFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SNNPSKGLALGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIENELLARNIHVIRRTFE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 DISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQYSLQNWEARLLLERSHAAKCPDIATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQYSLQNWEARLLLERSHAAKCPDIATQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LAGTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAAPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LAGTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAAPSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 FVLKPQREGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FVLKPQREGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVV
              370       380       390       400       410       420

              430       440       450       460       470    
pF1KE4 QCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV
              430       440       450       460       470    




474 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:01:06 2016 done: Sun Nov  6 01:01:06 2016
 Total Scan time:  3.250 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]