Result of FASTA (omim) for
pFN21AE4448
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4448, 463 aa
1>>>pF1KE4448 463 - 463 aa - 463 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4264+/-0.000336; mu= 17.6975+/- 0.021
mean_var=73.7139+/-15.568, 0's: 0 Z-trim(115.4): 9 B-trim: 1229 in 1/51
Lambda= 0.149382
statistics sampled from 25776 (25785) to 25776 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.302), width: 16
Scan time: 8.160
The best scores are: opt bits E(85289)
NP_004541 (OMIM: 252010,602985) NADH dehydrogenase ( 463) 3183 695.3 9.3e-200
XP_016856846 (OMIM: 252010,602985) PREDICTED: NADH ( 463) 3183 695.3 9.3e-200
XP_005245265 (OMIM: 252010,602985) PREDICTED: NADH ( 463) 3183 695.3 9.3e-200
NP_001159631 (OMIM: 252010,602985) NADH dehydrogen ( 457) 3126 683.0 4.6e-196
XP_005245266 (OMIM: 252010,602985) PREDICTED: NADH ( 365) 2475 542.6 6.6e-154
>>NP_004541 (OMIM: 252010,602985) NADH dehydrogenase [ub (463 aa)
initn: 3183 init1: 3183 opt: 3183 Z-score: 3707.3 bits: 695.3 E(85289): 9.3e-200
Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463)
10 20 30 40 50 60
pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
370 380 390 400 410 420
430 440 450 460
pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
:::::::::::::::::::::::::::::::::::::::::::
NP_004 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
430 440 450 460
>>XP_016856846 (OMIM: 252010,602985) PREDICTED: NADH deh (463 aa)
initn: 3183 init1: 3183 opt: 3183 Z-score: 3707.3 bits: 695.3 E(85289): 9.3e-200
Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463)
10 20 30 40 50 60
pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
370 380 390 400 410 420
430 440 450 460
pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
:::::::::::::::::::::::::::::::::::::::::::
XP_016 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
430 440 450 460
>>XP_005245265 (OMIM: 252010,602985) PREDICTED: NADH deh (463 aa)
initn: 3183 init1: 3183 opt: 3183 Z-score: 3707.3 bits: 695.3 E(85289): 9.3e-200
Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463)
10 20 30 40 50 60
pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
370 380 390 400 410 420
430 440 450 460
pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
:::::::::::::::::::::::::::::::::::::::::::
XP_005 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
430 440 450 460
>>NP_001159631 (OMIM: 252010,602985) NADH dehydrogenase (457 aa)
initn: 3126 init1: 3126 opt: 3126 Z-score: 3641.0 bits: 683.0 E(85289): 4.6e-196
Smith-Waterman score: 3126; 99.6% identity (99.8% similar) in 457 aa overlap (1-457:1-457)
10 20 30 40 50 60
pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
370 380 390 400 410 420
430 440 450 460
pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
:::::::::::::::::::::::::::::::::. ::
NP_001 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV
430 440 450
>>XP_005245266 (OMIM: 252010,602985) PREDICTED: NADH deh (365 aa)
initn: 2475 init1: 2475 opt: 2475 Z-score: 2884.1 bits: 542.6 E(85289): 6.6e-154
Smith-Waterman score: 2475; 100.0% identity (100.0% similar) in 365 aa overlap (99-463:1-365)
70 80 90 100 110 120
pF1KE4 VDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKT
::::::::::::::::::::::::::::::
XP_005 MELSGEMVRKCDPHIGLLHRGTEKLIEYKT
10 20 30
130 140 150 160 170 180
pF1KE4 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVT
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE4 THALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFS
100 110 120 130 140 150
250 260 270 280 290 300
pF1KE4 KNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPY
160 170 180 190 200 210
310 320 330 340 350 360
pF1KE4 DVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKR
220 230 240 250 260 270
370 380 390 400 410 420
pF1KE4 AEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPG
280 290 300 310 320 330
430 440 450 460
pF1KE4 FAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
:::::::::::::::::::::::::::::::::::
XP_005 FAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
340 350 360
463 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 00:35:29 2016 done: Sun Nov 6 00:35:30 2016
Total Scan time: 8.160 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]