FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4445, 461 aa
  1>>>pF1KE4445 461 - 461 aa - 461 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9258+/-0.000747; mu= 19.8784+/- 0.045
 mean_var=66.1627+/-12.880, 0's: 0 Z-trim(108.8): 11  B-trim: 7 in 1/50
 Lambda= 0.157677
 statistics sampled from 10467 (10473) to 10467 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.322), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS244.2 FUCA1 gene_id:2517|Hs108|chr1            ( 466) 3321 764.2       0
CCDS5200.1 FUCA2 gene_id:2519|Hs108|chr6           ( 467) 1860 431.9 6.8e-121


>>CCDS244.2 FUCA1 gene_id:2517|Hs108|chr1                 (466 aa)
 initn: 3321 init1: 3321 opt: 3321  Z-score: 4080.0  bits: 764.2 E(32554):    0
Smith-Waterman score: 3321; 100.0% identity (100.0% similar) in 461 aa overlap (1-461:6-466)

                    10        20        30        40        50     
pF1KE4      MRSRPAGPALLLLLLFLGAAESVRRAQPPRRYTPDWPSLDSRPLPAWFDEAKFGV
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MRAPGMRSRPAGPALLLLLLFLGAAESVRRAQPPRRYTPDWPSLDSRPLPAWFDEAKFGV
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KE4 FIHWGVFSVPAWGSEWFWWHWQGEGRPQYQRFMRDNYPPGFSYADFGPQFTARFFHPEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FIHWGVFSVPAWGSEWFWWHWQGEGRPQYQRFMRDNYPPGFSYADFGPQFTARFFHPEEW
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KE4 ADLFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSKDVGPHRDLVGELGTALRKRNIRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ADLFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSKDVGPHRDLVGELGTALRKRNIRYG
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KE4 LYHSLLEWFHPLYLLDKKNGFKTQHFVSAKTMPELYDLVNSYKPDLIWSDGEWECPDTYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LYHSLLEWFHPLYLLDKKNGFKTQHFVSAKTMPELYDLVNSYKPDLIWSDGEWECPDTYW
              190       200       210       220       230       240

         240       250       260       270       280       290     
pF1KE4 NSTNFLSWLYNDSPVKDEVVVNDRWGQNCSCHHGGYYNCEDKFKPQSLPDHKWEMCTSID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 NSTNFLSWLYNDSPVKDEVVVNDRWGQNCSCHHGGYYNCEDKFKPQSLPDHKWEMCTSID
              250       260       270       280       290       300

         300       310       320       330       340       350     
pF1KE4 KFSWGYRRDMALSDVTEESEIISELVQTVSLGGNYLLNIGPTKDGLIVPIFQERLLAVGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 KFSWGYRRDMALSDVTEESEIISELVQTVSLGGNYLLNIGPTKDGLIVPIFQERLLAVGK
              310       320       330       340       350       360

         360       370       380       390       400       410     
pF1KE4 WLSINGEAIYASKPWRVQWEKNTTSVWYTSKGSAVYAIFLHWPENGVLNLESPITTSTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 WLSINGEAIYASKPWRVQWEKNTTSVWYTSKGSAVYAIFLHWPENGVLNLESPITTSTTK
              370       380       390       400       410       420

         420       430       440       450       460 
pF1KE4 ITMLGIQGDLKWSTDPDKGLFISLPQLPPSAVPAEFAWTIKLTGVK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ITMLGIQGDLKWSTDPDKGLFISLPQLPPSAVPAEFAWTIKLTGVK
              430       440       450       460      

>>CCDS5200.1 FUCA2 gene_id:2519|Hs108|chr6                (467 aa)
 initn: 1074 init1: 929 opt: 1860  Z-score: 2283.9  bits: 431.9 E(32554): 6.8e-121
Smith-Waterman score: 1860; 54.9% identity (77.7% similar) in 461 aa overlap (4-460:8-466)

                   10        20        30        40        50      
pF1KE4     MRSRPAGPALLLLLLFLGAAESVRRAQPPRRYTPDWPSLDSRPLPAWFDEAKFGVF
              : : : ::::::.:        :.   :. : : :::.: ::::::.::::.:
CCDS52 MRPQELPRLAFPLLLLLLLLLPPPPC--PAHSATRFDPTWESLDARQLPAWFDQAKFGIF
               10        20          30        40        50        

         60        70        80        90       100       110      
pF1KE4 IHWGVFSVPAWGSEWFWWHWQGEGRPQYQRFMRDNYPPGFSYADFGPQFTARFFHPEEWA
       :::::::::..:::::::.:: :  :.: .::.:::::.:.: :::: :::.::. ..::
CCDS52 IHWGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWA
       60        70        80        90       100       110        

        120       130       140       150       160       170      
pF1KE4 DLFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSKDVGPHRDLVGELGTALRKR-NIRYG
       :.:::.::::.:::.::::::: : :  :::::. : ::.::.: :: .:.:.: ..:.:
CCDS52 DIFQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFG
      120       130       140       150       160       170        

         180       190       200       210       220       230     
pF1KE4 LYHSLLEWFHPLYLLDKKNGFKTQHFVSAKTMPELYDLVNSYKPDLIWSDGEWECPDTYW
       ::.::.::::::.: :....:. ..:  .::.::::.:::.:.:...::::.   :: ::
CCDS52 LYYSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYW
      180       190       200       210       220       230        

         240       250       260       270       280       290     
pF1KE4 NSTNFLSWLYNDSPVKDEVVVNDRWGQNCSCHHGGYYNCEDKFKPQSLPDHKWEMCTSID
       :::.::.::::.:::.  ::.::::: .  :.:::.:.: :...:  :  :::: : .::
CCDS52 NSTGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTID
      240       250       260       270       280       290        

         300       310       320       330       340       350     
pF1KE4 KFSWGYRRDMALSDVTEESEIISELVQTVSLGGNYLLNIGPTKDGLIVPIFQERLLAVGK
       :.::::::. ..::     :....::.::: ::: :.::::: :: :  .:.:::  .:.
CCDS52 KLSWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQMGS
      300       310       320       330       340       350        

         360       370       380         390       400        410  
pF1KE4 WLSINGEAIYASKPWRVQWEKNTTSVWYTSKGSA--VYAIFLHWPENGVLNLESP-ITTS
       ::..:::::: .. :: : .  : .:::::: .   ::::::.:: .: : :  :    .
CCDS52 WLKVNGEAIYETHTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILG
      360       370       380       390       400       410        

            420       430       440       450       460 
pF1KE4 TTKITMLGIQGDLKWSTDPDKGLFISLPQLPPSAVPAEFAWTIKLTGVK
       .:.. .::    :.: .  ..:... ::::    .: ...:.. ::.: 
CCDS52 ATEVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI
      420       430       440       450       460       




461 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:05:43 2016 done: Sun Nov  6 01:05:44 2016
 Total Scan time:  2.960 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]