FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4440, 457 aa
  1>>>pF1KE4440 457 - 457 aa - 457 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1828+/-0.000914; mu= -3.0495+/- 0.055
 mean_var=286.9821+/-57.036, 0's: 0 Z-trim(114.9): 18  B-trim: 0 in 0/54
 Lambda= 0.075709
 statistics sampled from 15480 (15491) to 15480 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.476), width:  16
 Scan time:  3.920

The best scores are:                                      opt bits E(32554)
CCDS9906.1 CHGA gene_id:1113|Hs108|chr14           ( 457) 2994 340.1 2.8e-93
CCDS76718.1 CHGA gene_id:1113|Hs108|chr14          ( 306) 1237 148.1 1.2e-35


>>CCDS9906.1 CHGA gene_id:1113|Hs108|chr14                (457 aa)
 initn: 2994 init1: 2994 opt: 2994  Z-score: 1788.1  bits: 340.1 E(32554): 2.8e-93
Smith-Waterman score: 2994; 100.0% identity (100.0% similar) in 457 aa overlap (1-457:1-457)

               10        20        30        40        50        60
pF1KE4 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
              370       380       390       400       410       420

              430       440       450       
pF1KE4 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
       :::::::::::::::::::::::::::::::::::::
CCDS99 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
              430       440       450       

>>CCDS76718.1 CHGA gene_id:1113|Hs108|chr14               (306 aa)
 initn: 1237 init1: 1237 opt: 1237  Z-score: 753.4  bits: 148.1 E(32554): 1.2e-35
Smith-Waterman score: 1678; 66.7% identity (67.0% similar) in 457 aa overlap (1-457:1-306)

               10        20        30        40        50        60
pF1KE4 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS76 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELK--
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE4 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA
                                                                   
CCDS76 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE4 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG
                                                                   
CCDS76 ------------------------------------------------------------
                                                                   

              250       260       270       280       290       300
pF1KE4 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
                                    .::::::::::::::::::::::::::::::
CCDS76 -----------------------------GRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
                                   120       130       140         

              310       320       330       340       350       360
pF1KE4 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
     150       160       170       180       190       200         

              370       380       390       400       410       420
pF1KE4 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
     210       220       230       240       250       260         

              430       440       450       
pF1KE4 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
       :::::::::::::::::::::::::::::::::::::
CCDS76 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
     270       280       290       300      




457 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:37:52 2016 done: Sun Nov  6 00:37:53 2016
 Total Scan time:  3.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]