FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4436, 453 aa
  1>>>pF1KE4436 453 - 453 aa - 453 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1622+/-0.00119; mu= -11.3850+/- 0.072
 mean_var=391.5989+/-78.046, 0's: 0 Z-trim(113.9): 9  B-trim: 0 in 0/53
 Lambda= 0.064812
 statistics sampled from 14513 (14520) to 14513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.446), width:  16
 Scan time:  3.570

The best scores are:                                      opt bits E(32554)
CCDS9833.1 DLST gene_id:1743|Hs108|chr14           ( 453) 2963 290.8 1.9e-78


>>CCDS9833.1 DLST gene_id:1743|Hs108|chr14                (453 aa)
 initn: 2963 init1: 2963 opt: 2963  Z-score: 1521.8  bits: 290.8 E(32554): 1.9e-78
Smith-Waterman score: 2963; 100.0% identity (100.0% similar) in 453 aa overlap (1-453:1-453)

               10        20        30        40        50        60
pF1KE4 MLSRSRCVSRAFSRSLSAFQKGNCPLGRRSLPGVSLCQGPGYPNSRKVVINNSVFSVRFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MLSRSRCVSRAFSRSLSAFQKGNCPLGRRSLPGVSLCQGPGYPNSRKVVINNSVFSVRFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RTTAVCKDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 RTTAVCKDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPAN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 GVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 PTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 AQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 AQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 VIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 VIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 IEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 IEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVAL
              370       380       390       400       410       420

              430       440       450   
pF1KE4 TYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL
       :::::::::::::::::::::::::::::::::
CCDS98 TYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL
              430       440       450   




453 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:08:32 2016 done: Sun Nov  6 01:08:33 2016
 Total Scan time:  3.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]