Result of FASTA (omim) for
pFN21AE4422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4422, 437 aa
1>>>pF1KE4422 437 - 437 aa - 437 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1740+/-0.000361; mu= 18.5913+/- 0.022
mean_var=69.0652+/-14.428, 0's: 0 Z-trim(114.6): 31 B-trim: 1197 in 1/54
Lambda= 0.154328
statistics sampled from 24555 (24586) to 24555 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.288), width: 16
Scan time: 8.800
The best scores are: opt bits E(85289)
NP_003910 (OMIM: 159900,604149) epsilon-sarcoglyca ( 437) 2980 672.5 5.8e-193
XP_011514967 (OMIM: 159900,604149) PREDICTED: epsi ( 467) 2941 663.9 2.5e-190
NP_001092871 (OMIM: 159900,604149) epsilon-sarcogl ( 462) 2838 640.9 2e-183
XP_016868254 (OMIM: 159900,604149) PREDICTED: epsi ( 408) 2709 612.2 8e-175
XP_005250732 (OMIM: 159900,604149) PREDICTED: epsi ( 473) 2709 612.2 9e-175
XP_016868252 (OMIM: 159900,604149) PREDICTED: epsi ( 438) 2670 603.5 3.5e-172
XP_011514969 (OMIM: 159900,604149) PREDICTED: epsi ( 438) 2670 603.5 3.5e-172
XP_011514965 (OMIM: 159900,604149) PREDICTED: epsi ( 503) 2670 603.5 3.9e-172
NP_001288068 (OMIM: 159900,604149) epsilon-sarcogl ( 396) 2430 550.0 3.9e-156
XP_016868253 (OMIM: 159900,604149) PREDICTED: epsi ( 428) 2360 534.5 2e-151
NP_001092870 (OMIM: 159900,604149) epsilon-sarcogl ( 451) 2360 534.5 2.1e-151
XP_011514968 (OMIM: 159900,604149) PREDICTED: epsi ( 458) 2360 534.5 2.2e-151
XP_016868257 (OMIM: 159900,604149) PREDICTED: epsi ( 346) 2339 529.7 4.4e-150
XP_011514971 (OMIM: 159900,604149) PREDICTED: epsi ( 376) 2300 521.1 1.9e-147
XP_016868255 (OMIM: 159900,604149) PREDICTED: epsi ( 399) 2089 474.1 2.8e-133
XP_005250734 (OMIM: 159900,604149) PREDICTED: epsi ( 464) 2089 474.2 3.2e-133
XP_011514966 (OMIM: 159900,604149) PREDICTED: epsi ( 494) 2089 474.2 3.3e-133
XP_016868258 (OMIM: 159900,604149) PREDICTED: epsi ( 337) 1719 391.7 1.6e-108
XP_016868256 (OMIM: 159900,604149) PREDICTED: epsi ( 367) 1719 391.7 1.7e-108
NP_000014 (OMIM: 600119,608099) alpha-sarcoglycan ( 387) 1082 249.9 8.6e-66
XP_011523422 (OMIM: 600119,608099) PREDICTED: alph ( 467) 1055 243.9 6.4e-64
XP_011523426 (OMIM: 600119,608099) PREDICTED: alph ( 311) 852 198.6 1.9e-50
XP_016868259 (OMIM: 159900,604149) PREDICTED: epsi ( 224) 803 187.6 2.8e-47
XP_011523424 (OMIM: 600119,608099) PREDICTED: alph ( 375) 702 165.3 2.5e-40
XP_016880439 (OMIM: 600119,608099) PREDICTED: alph ( 324) 699 164.6 3.5e-40
XP_011523423 (OMIM: 600119,608099) PREDICTED: alph ( 417) 545 130.4 8.9e-30
XP_011523425 (OMIM: 600119,608099) PREDICTED: alph ( 343) 512 123.0 1.2e-27
NP_001129169 (OMIM: 600119,608099) alpha-sarcoglyc ( 263) 505 121.3 3e-27
>>NP_003910 (OMIM: 159900,604149) epsilon-sarcoglycan is (437 aa)
initn: 2980 init1: 2980 opt: 2980 Z-score: 3585.3 bits: 672.5 E(85289): 5.8e-193
Smith-Waterman score: 2980; 99.5% identity (99.8% similar) in 437 aa overlap (1-437:1-437)
10 20 30 40 50 60
pF1KE4 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRSVYPSAGVLFVH
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
NP_003 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRNVYPSAGVLFVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNL
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_003 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNL
370 380 390 400 410 420
430
pF1KE4 PHQTQIPQQQTTGKWYP
:::::::::::::::::
NP_003 PHQTQIPQQQTTGKWYP
430
>>XP_011514967 (OMIM: 159900,604149) PREDICTED: epsilon- (467 aa)
initn: 2941 init1: 2941 opt: 2941 Z-score: 3537.9 bits: 663.9 E(85289): 2.5e-190
Smith-Waterman score: 2941; 99.5% identity (99.8% similar) in 433 aa overlap (1-433:1-433)
10 20 30 40 50 60
pF1KE4 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRSVYPSAGVLFVH
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
XP_011 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRNVYPSAGVLFVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNL
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
XP_011 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNL
370 380 390 400 410 420
430
pF1KE4 PHQTQIPQQQTTGKWYP
:::::::::::::
XP_011 PHQTQIPQQQTTGDFRLTTFQRFEASIMKLFIRFQLQDVYQNFSLQF
430 440 450 460
>>NP_001092871 (OMIM: 159900,604149) epsilon-sarcoglycan (462 aa)
initn: 2836 init1: 2836 opt: 2838 Z-score: 3414.1 bits: 640.9 E(85289): 2e-183
Smith-Waterman score: 2920; 94.2% identity (94.4% similar) in 462 aa overlap (1-437:1-462)
10 20 30 40 50 60
pF1KE4 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRSVYPSAGVLFVH
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
NP_001 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRNVYPSAGVLFVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
310 320 330 340 350 360
370 380 390 400 410
pF1KE4 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQ--
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
NP_001 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQWS
370 380 390 400 410 420
420 430
pF1KE4 -----------------------NLPHQTQIPQQQTTGKWYP
:::::::::::::::::::
NP_001 FAPVAQAGVQWSDLGSLQPPPPRNLPHQTQIPQQQTTGKWYP
430 440 450 460
>>XP_016868254 (OMIM: 159900,604149) PREDICTED: epsilon- (408 aa)
initn: 2709 init1: 2709 opt: 2709 Z-score: 3259.6 bits: 612.2 E(85289): 8e-175
Smith-Waterman score: 2709; 99.5% identity (99.8% similar) in 401 aa overlap (37-437:8-408)
10 20 30 40 50 60
pF1KE4 WELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRSVYPSAGVLFVHVLEREY
::::::::::::.:::::::::::::::::
XP_016 MAAGMKDVYSIFSKVHSDRNVYPSAGVLFVHVLEREY
10 20 30
70 80 90 100 110 120
pF1KE4 FKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE4 TIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 VKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 RCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE4 SLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE4 STKELRDMSKNREIAWPLSTLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNLPHQTQI
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
XP_016 STKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNLPHQTQI
340 350 360 370 380 390
430
pF1KE4 PQQQTTGKWYP
:::::::::::
XP_016 PQQQTTGKWYP
400
>>XP_005250732 (OMIM: 159900,604149) PREDICTED: epsilon- (473 aa)
initn: 2709 init1: 2709 opt: 2709 Z-score: 3258.7 bits: 612.2 E(85289): 9e-175
Smith-Waterman score: 2869; 91.9% identity (92.1% similar) in 469 aa overlap (5-437:5-473)
10 20 30
pF1KE4 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLT------------------------
::::::::::::::::::::::::::::::::
XP_005 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTAFLLSCADGINGTVNWKTRQANNF
10 20 30 40 50 60
40 50 60 70 80
pF1KE4 ------------VYSIFSKVHSDRSVYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP
::::::::::::.:::::::::::::::::::::::::::::::::::
XP_005 IISRKMAAGMKDVYSIFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE4 ITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARH
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE4 NLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSA
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE4 LDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRT
250 260 270 280 290 300
270 280 290 300 310 320
pF1KE4 QFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVP
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE4 SAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPL
370 380 390 400 410 420
390 400 410 420 430
pF1KE4 STLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNLPHQTQIPQQQTTGKWYP
:::::::::::::: ::::::::::::::::::::::::::::::::::::::
XP_005 STLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNLPHQTQIPQQQTTGKWYP
430 440 450 460 470
>>XP_016868252 (OMIM: 159900,604149) PREDICTED: epsilon- (438 aa)
initn: 2670 init1: 2670 opt: 2670 Z-score: 3212.2 bits: 603.5 E(85289): 3.5e-172
Smith-Waterman score: 2670; 99.5% identity (99.7% similar) in 397 aa overlap (37-433:8-404)
10 20 30 40 50 60
pF1KE4 WELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRSVYPSAGVLFVHVLEREY
::::::::::::.:::::::::::::::::
XP_016 MAAGMKDVYSIFSKVHSDRNVYPSAGVLFVHVLEREY
10 20 30
70 80 90 100 110 120
pF1KE4 FKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE4 TIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 VKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 RCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE4 SLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE4 STKELRDMSKNREIAWPLSTLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNLPHQTQI
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
XP_016 STKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNLPHQTQI
340 350 360 370 380 390
430
pF1KE4 PQQQTTGKWYP
:::::::
XP_016 PQQQTTGDFRLTTFQRFEASIMKLFIRFQLQDVYQNFSLQF
400 410 420 430
>>XP_011514969 (OMIM: 159900,604149) PREDICTED: epsilon- (438 aa)
initn: 2670 init1: 2670 opt: 2670 Z-score: 3212.2 bits: 603.5 E(85289): 3.5e-172
Smith-Waterman score: 2670; 99.5% identity (99.7% similar) in 397 aa overlap (37-433:8-404)
10 20 30 40 50 60
pF1KE4 WELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRSVYPSAGVLFVHVLEREY
::::::::::::.:::::::::::::::::
XP_011 MAAGMKDVYSIFSKVHSDRNVYPSAGVLFVHVLEREY
10 20 30
70 80 90 100 110 120
pF1KE4 FKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE4 TIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 VKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 RCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE4 SLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE4 STKELRDMSKNREIAWPLSTLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNLPHQTQI
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
XP_011 STKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNLPHQTQI
340 350 360 370 380 390
430
pF1KE4 PQQQTTGKWYP
:::::::
XP_011 PQQQTTGDFRLTTFQRFEASIMKLFIRFQLQDVYQNFSLQF
400 410 420 430
>>XP_011514965 (OMIM: 159900,604149) PREDICTED: epsilon- (503 aa)
initn: 2670 init1: 2670 opt: 2670 Z-score: 3211.4 bits: 603.5 E(85289): 3.9e-172
Smith-Waterman score: 2830; 91.8% identity (92.0% similar) in 465 aa overlap (5-433:5-469)
10 20 30
pF1KE4 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLT------------------------
::::::::::::::::::::::::::::::::
XP_011 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTAFLLSCADGINGTVNWKTRQANNF
10 20 30 40 50 60
40 50 60 70 80
pF1KE4 ------------VYSIFSKVHSDRSVYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP
::::::::::::.:::::::::::::::::::::::::::::::::::
XP_011 IISRKMAAGMKDVYSIFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE4 ITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARH
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE4 NLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSA
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE4 LDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRT
250 260 270 280 290 300
270 280 290 300 310 320
pF1KE4 QFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVP
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE4 SAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPL
370 380 390 400 410 420
390 400 410 420 430
pF1KE4 STLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNLPHQTQIPQQQTTGKWYP
:::::::::::::: ::::::::::::::::::::::::::::::::::
XP_011 STLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNLPHQTQIPQQQTTGDFRLTTFQRFE
430 440 450 460 470 480
XP_011 ASIMKLFIRFQLQDVYQNFSLQF
490 500
>>NP_001288068 (OMIM: 159900,604149) epsilon-sarcoglycan (396 aa)
initn: 2687 init1: 2430 opt: 2430 Z-score: 2924.1 bits: 550.0 E(85289): 3.9e-156
Smith-Waterman score: 2609; 90.4% identity (90.4% similar) in 437 aa overlap (1-437:1-396)
10 20 30 40 50 60
pF1KE4 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRSVYPSAGVLFVH
::::::::::::::::::::::::::::::::::::
NP_001 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLT------------------------
10 20 30
70 80 90 100 110 120
pF1KE4 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
:::::::::::::::::::::::::::::::::::::::::::
NP_001 -----------------GEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
40 50 60 70
130 140 150 160 170 180
pF1KE4 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
80 90 100 110 120 130
190 200 210 220 230 240
pF1KE4 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE4 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE4 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE4 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNL
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_001 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNL
320 330 340 350 360 370
430
pF1KE4 PHQTQIPQQQTTGKWYP
:::::::::::::::::
NP_001 PHQTQIPQQQTTGKWYP
380 390
>>XP_016868253 (OMIM: 159900,604149) PREDICTED: epsilon- (428 aa)
initn: 2903 init1: 2360 opt: 2360 Z-score: 2839.4 bits: 534.5 E(85289): 2e-151
Smith-Waterman score: 2889; 97.5% identity (97.7% similar) in 437 aa overlap (1-437:1-428)
10 20 30 40 50 60
pF1KE4 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRSVYPSAGVLFVH
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
XP_016 MQLPRWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYSIFSKVHSDRNVYPSAGVLFVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLEREYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVH
:::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_016 YKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGV---------IQLVH
310 320 330 340 350
370 380 390 400 410 420
pF1KE4 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIHPLHTDNYDSTNMPLMQTQQNL
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
XP_016 HSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNL
360 370 380 390 400 410
430
pF1KE4 PHQTQIPQQQTTGKWYP
:::::::::::::::::
XP_016 PHQTQIPQQQTTGKWYP
420
437 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:13:08 2016 done: Sun Nov 6 01:13:09 2016
Total Scan time: 8.800 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]