FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4416, 429 aa
  1>>>pF1KE4416 429 - 429 aa - 429 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3444+/-0.000901; mu= 16.5490+/- 0.054
 mean_var=59.7500+/-11.894, 0's: 0 Z-trim(104.9): 23  B-trim: 0 in 0/51
 Lambda= 0.165923
 statistics sampled from 8156 (8164) to 8156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.251), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS14484.1 GLA gene_id:2717|Hs108|chrX            ( 429) 3046 737.7  5e-213
CCDS14030.1 NAGA gene_id:4668|Hs108|chr22          ( 411) 1282 315.5 6.2e-86


>>CCDS14484.1 GLA gene_id:2717|Hs108|chrX                 (429 aa)
 initn: 3046 init1: 3046 opt: 3046  Z-score: 3938.1  bits: 737.7 E(32554): 5e-213
Smith-Waterman score: 3046; 100.0% identity (100.0% similar) in 429 aa overlap (1-429:1-429)

               10        20        30        40        50        60
pF1KE4 MQLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 DSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 RHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 GPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENT
              370       380       390       400       410       420

                
pF1KE4 MQMSLKDLL
       :::::::::
CCDS14 MQMSLKDLL
                

>>CCDS14030.1 NAGA gene_id:4668|Hs108|chr22               (411 aa)
 initn: 1102 init1: 774 opt: 1282  Z-score: 1656.3  bits: 315.5 E(32554): 6.2e-86
Smith-Waterman score: 1282; 49.9% identity (72.9% similar) in 399 aa overlap (32-424:18-409)

              10        20        30        40        50        60 
pF1KE4 QLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEPD
                                     ::::: .:: :::: :::: ::..:.:.: 
CCDS14              MLLKTVLLLGHVAQVLMLDNGLLQTPPMGWLAWERFRCNINCDEDPK
                            10        20        30        40       

              70        80        90       100       110       120 
pF1KE4 SCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLA
       .::::.::::::. :...::.: :: :: :::::..  ::. :::. ::.::::::  ::
CCDS14 NCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGG-RDASGRLMPDPKRFPHGIPFLA
        50        60        70        80         90       100      

             130       140        150       160       170       180
pF1KE4 NYVHSKGLKLGIYADVGNKTCAGFPGS-FGYYDIDAQTFADWGVDLLKFDGCYCDSLENL
       .:::: :::::::::.:: :: :.::. .     ::::::.: ::.::.:::. .. :. 
CCDS14 DYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCF-STPEER
        110       120       130       140       150        160     

              190       200       210        220       230         
pF1KE4 ADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQ-KPNYTEIRQYCNHWRNFADIDDSWKSI
       :.:: .:. ::: ::: :..:: :: :   .  . ::. . . :: :::. ::.::: :.
CCDS14 AQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRVNYSLLADICNLWRNYDDIQDSWWSV
         170       180       190       200       210       220     

     240       250       260       270       280       290         
pF1KE4 KSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSND
        :::.:   .:. .  ::::: :::::::.::::::: .:. .:::::...::::.::.:
CCDS14 LSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTD
         230       240       250       260       270       280     

     300       310       320       330        340       350        
pF1KE4 LRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNF-EVWERPLSGLAWAVAMIN-RQ
       :: :: :   .::.  .: ::::::: :: ....  .. ::. ::::. : :..... : 
CCDS14 LRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRT
         290       300       310       320       330       340     

       360       370       380       390       400       410       
pF1KE4 EIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQL
       ..  :  :    .:::.    . . . .: .     ..  .  . .   :::.:.:.  :
CCDS14 DM--PYRYH---SSLGQLNFTGSVIYEAQDVYSGDIISGLRDETNFTVIINPSGVVMWYL
           350          360       370       380       390       400

         420         
pF1KE4 E--NTMQMSLKDLL
          ....::     
CCDS14 YPIKNLEMSQQ   
              410    




429 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:14:59 2016 done: Sun Nov  6 01:14:59 2016
 Total Scan time:  2.580 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]