FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4411, 424 aa
  1>>>pF1KE4411 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0299+/- 0.001; mu= 0.6455+/- 0.060
 mean_var=203.1238+/-40.141, 0's: 0 Z-trim(111.2): 11  B-trim: 28 in 1/51
 Lambda= 0.089990
 statistics sampled from 12182 (12188) to 12182 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.374), width:  16
 Scan time:  3.230

The best scores are:                                      opt bits E(32554)
CCDS1929.1 STAMBP gene_id:10617|Hs108|chr2         ( 424) 2818 378.4 7.3e-105
CCDS7391.1 STAMBPL1 gene_id:57559|Hs108|chr10      ( 436) 1627 223.8 2.6e-58


>>CCDS1929.1 STAMBP gene_id:10617|Hs108|chr2              (424 aa)
 initn: 2818 init1: 2818 opt: 2818  Z-score: 1996.1  bits: 378.4 E(32554): 7.3e-105
Smith-Waterman score: 2818; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)

               10        20        30        40        50        60
pF1KE4 MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYTKEYTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYTKEYTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 YNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAFEEMIRNQELEKERLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 YNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAFEEMIRNQELEKERLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 IVQEFGKVDPGLGGPLVPDLEKPSLDVFPTLTVSSIQPSDCHTTVRPAKPPVVDRSLKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 IVQEFGKVDPGLGGPLVPDLEKPSLDVFPTLTVSSIQPSDCHTTVRPAKPPVVDRSLKPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 ALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 IPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 IPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 ESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVVDRAVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVVDRAVTI
              370       380       390       400       410       420

           
pF1KE4 TDLR
       ::::
CCDS19 TDLR
           

>>CCDS7391.1 STAMBPL1 gene_id:57559|Hs108|chr10           (436 aa)
 initn: 1653 init1: 920 opt: 1627  Z-score: 1160.3  bits: 223.8 E(32554): 2.6e-58
Smith-Waterman score: 1627; 55.8% identity (78.6% similar) in 430 aa overlap (1-424:16-436)

                              10        20        30        40     
pF1KE4                MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIR
                      : :: :::: ::.::::::.::  . ..::: ::::::::::. :
CCDS73 MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMER
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KE4 MASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEE
       :::.: ::::.:.::.::::.::::.::::.::::.. ..:::.: .:::::::::...:
CCDS73 MASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE
               70        80        90       100       110       120

         110       120       130       140       150       160     
pF1KE4 LKAELLKRYTKEYTEYNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAF
       :: .:::.:. :: :: . :.:   :. ...  :. .: :..:.::..:::::.:::  :
CCDS73 LKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFF
              130       140       150       160       170       180

         170       180       190       200       210               
pF1KE4 EEMIRNQELEKERLKIVQEFGKVDPGLGGPLVPDLEKPSLDVFPT------LTVSSIQPS
       :.....::: . ...  :  :         :  ...  .:. : :      :.: . ::.
CCDS73 EDQLKKQELARGQMRSQQTSG---------LSEQIDGSALSCFSTHQNNSLLNVFADQPN
              190       200                210       220       230 

     220       230       240       250       260       270         
pF1KE4 DCHTTVRPAKPPVVDRSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGV
          .:   .. : :.:.: :.:  .. .  ...::: ::.:  :: .::::: .::.::.
CCDS73 KSDATNYASHSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGI
             240       250       260       270       280       290 

     280       290       300       310       320       330         
pF1KE4 ETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPT
       :::::::::: .::::::::..:::::: :::. :: :::: .:::. :.::::::::::
CCDS73 ETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPT
             300       310       320       330       340       350 

     340       350       360       370       380       390         
pF1KE4 QTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHS
       :::::::::::::::::.::::..::::::: ..::.:.::. :. :.:.:..::::::.
CCDS73 QTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHT
             360       370       380       390       400       410 

     400       410       420    
pF1KE4 KDPPLFCSCSHVTVVDRAVTITDLR
       :.: ::  :.:: : :  . . :::
CCDS73 KEPRLFSICKHVLVKDIKIIVLDLR
             420       430      




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:17:26 2016 done: Sun Nov  6 01:17:27 2016
 Total Scan time:  3.230 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]