FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4407, 421 aa
  1>>>pF1KE4407 421 - 421 aa - 421 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8571+/-0.000893; mu= 14.1544+/- 0.053
 mean_var=77.5743+/-15.166, 0's: 0 Z-trim(106.8): 17  B-trim: 0 in 0/51
 Lambda= 0.145618
 statistics sampled from 9213 (9220) to 9213 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.283), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS11414.2 CNP gene_id:1267|Hs108|chr17           ( 421) 2803 598.5 3.8e-171
CCDS82123.1 CNP gene_id:1267|Hs108|chr17           ( 401) 2665 569.5  2e-162


>>CCDS11414.2 CNP gene_id:1267|Hs108|chr17                (421 aa)
 initn: 2803 init1: 2803 opt: 2803  Z-score: 3186.1  bits: 598.5 E(32554): 3.8e-171
Smith-Waterman score: 2803; 100.0% identity (100.0% similar) in 421 aa overlap (1-421:1-421)

               10        20        30        40        50        60
pF1KE4 MNRGFSRKSHTFLPKIFFRKMSSSGAKDKPELQFPFLQDEDTVATLLECKTLFILRGLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNRGFSRKSHTFLPKIFFRKMSSSGAKDKPELQFPFLQDEDTVATLLECKTLFILRGLPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 SGKSTLARVIVDKYRDGTKMVSADAYKITPGARGAFSEEYKRLDEDLAAYCRRRDIRILV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SGKSTLARVIVDKYRDGTKMVSADAYKITPGARGAFSEEYKRLDEDLAAYCRRRDIRILV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPGDEPREKMDLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPGDEPREKMDLVT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 YFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGARV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGARV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 ELSEQQLQLWPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLLEILRQEKGGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELSEQQLQLWPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLLEILRQEKGGSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 GEEVGELSRGKLYSLGNGRWMLTLAKNMEVRAIFTGYYGKGKPVPTQGSRKGGALQSCTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GEEVGELSRGKLYSLGNGRWMLTLAKNMEVRAIFTGYYGKGKPVPTQGSRKGGALQSCTI
              370       380       390       400       410       420

        
pF1KE4 I
       :
CCDS11 I
        

>>CCDS82123.1 CNP gene_id:1267|Hs108|chr17                (401 aa)
 initn: 2665 init1: 2665 opt: 2665  Z-score: 3029.7  bits: 569.5 E(32554): 2e-162
Smith-Waterman score: 2665; 100.0% identity (100.0% similar) in 401 aa overlap (21-421:1-401)

               10        20        30        40        50        60
pF1KE4 MNRGFSRKSHTFLPKIFFRKMSSSGAKDKPELQFPFLQDEDTVATLLECKTLFILRGLPG
                           ::::::::::::::::::::::::::::::::::::::::
CCDS82                     MSSSGAKDKPELQFPFLQDEDTVATLLECKTLFILRGLPG
                                   10        20        30        40

               70        80        90       100       110       120
pF1KE4 SGKSTLARVIVDKYRDGTKMVSADAYKITPGARGAFSEEYKRLDEDLAAYCRRRDIRILV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SGKSTLARVIVDKYRDGTKMVSADAYKITPGARGAFSEEYKRLDEDLAAYCRRRDIRILV
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KE4 LDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPG
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KE4 LEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPGDEPREKMDLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPGDEPREKMDLVT
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KE4 YFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGARV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGARV
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KE4 ELSEQQLQLWPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLLEILRQEKGGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ELSEQQLQLWPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLLEILRQEKGGSR
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KE4 GEEVGELSRGKLYSLGNGRWMLTLAKNMEVRAIFTGYYGKGKPVPTQGSRKGGALQSCTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GEEVGELSRGKLYSLGNGRWMLTLAKNMEVRAIFTGYYGKGKPVPTQGSRKGGALQSCTI
              350       360       370       380       390       400

        
pF1KE4 I
       :
CCDS82 I
        




421 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  9 12:19:36 2016 done: Wed Nov  9 12:19:37 2016
 Total Scan time:  3.100 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]