Result of FASTA (ccds) for
pFN21AE4405
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4405, 419 aa
1>>>pF1KE4405 419 - 419 aa - 419 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7523+/-0.000888; mu= 10.9509+/- 0.054
mean_var=102.8695+/-20.008, 0's: 0 Z-trim(108.5): 22 B-trim: 0 in 0/52
Lambda= 0.126454
statistics sampled from 10222 (10237) to 10222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.314), width: 16
Scan time: 2.490
The best scores are: opt bits E(32554)
CCDS6210.1 TERF1 gene_id:7013|Hs108|chr8 ( 419) 2763 514.6 7.3e-146
CCDS6211.1 TERF1 gene_id:7013|Hs108|chr8 ( 439) 1963 368.6 6.5e-102
>>CCDS6210.1 TERF1 gene_id:7013|Hs108|chr8 (419 aa)
initn: 2763 init1: 2763 opt: 2763 Z-score: 2732.2 bits: 514.6 E(32554): 7.3e-146
Smith-Waterman score: 2763; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)
10 20 30 40 50 60
pF1KE4 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKRSHKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKRSHKN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 LFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKR
310 320 330 340 350 360
370 380 390 400 410
pF1KE4 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED
370 380 390 400 410
>>CCDS6211.1 TERF1 gene_id:7013|Hs108|chr8 (439 aa)
initn: 2749 init1: 1936 opt: 1963 Z-score: 1943.1 bits: 368.6 E(32554): 6.5e-102
Smith-Waterman score: 2713; 95.4% identity (95.4% similar) in 439 aa overlap (1-419:1-439)
10 20 30 40 50 60
pF1KE4 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI
190 200 210 220 230 240
250 260 270 280 290
pF1KE4 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRK-----
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDK
250 260 270 280 290 300
300 310 320 330 340
pF1KE4 ---------------RSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES
:::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE4 RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML
370 380 390 400 410 420
410
pF1KE4 KDRWRTMKKLKLISSDSED
:::::::::::::::::::
CCDS62 KDRWRTMKKLKLISSDSED
430
419 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:19:49 2016 done: Sun Nov 6 01:19:49 2016
Total Scan time: 2.490 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]