Result of FASTA (omim) for
pFN21AE4387
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4387, 408 aa
1>>>pF1KE4387 408 - 408 aa - 408 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6191+/-0.000441; mu= 21.0701+/- 0.027
mean_var=63.7686+/-13.691, 0's: 0 Z-trim(109.3): 27 B-trim: 0 in 0/48
Lambda= 0.160609
statistics sampled from 17430 (17443) to 17430 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.546), E-opt: 0.2 (0.205), width: 16
Scan time: 8.120
The best scores are: opt bits E(85289)
NP_001373 (OMIM: 191350,608093,614750) UDP-N-acety ( 408) 2711 637.3 2e-182
XP_005271479 (OMIM: 191350,608093,614750) PREDICTE ( 434) 2586 608.4 1.1e-173
XP_016872782 (OMIM: 191350,608093,614750) PREDICTE ( 301) 1978 467.4 2.1e-131
XP_011540950 (OMIM: 191350,608093,614750) PREDICTE ( 327) 1853 438.4 1.2e-122
XP_016872783 (OMIM: 191350,608093,614750) PREDICTE ( 242) 1625 385.5 7.6e-107
XP_016872784 (OMIM: 191350,608093,614750) PREDICTE ( 236) 1542 366.2 4.6e-101
>>NP_001373 (OMIM: 191350,608093,614750) UDP-N-acetylglu (408 aa)
initn: 2711 init1: 2711 opt: 2711 Z-score: 3396.1 bits: 637.3 E(85289): 2e-182
Smith-Waterman score: 2711; 100.0% identity (100.0% similar) in 408 aa overlap (1-408:1-408)
10 20 30 40 50 60
pF1KE4 MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 HNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 RHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNN
310 320 330 340 350 360
370 380 390 400
pF1KE4 MTLINLLLKVLGPIHERNLTLLLLLLQILGSAITFSIRYQLVRLFYDV
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTLINLLLKVLGPIHERNLTLLLLLLQILGSAITFSIRYQLVRLFYDV
370 380 390 400
>>XP_005271479 (OMIM: 191350,608093,614750) PREDICTED: U (434 aa)
initn: 2611 init1: 2586 opt: 2586 Z-score: 3239.2 bits: 608.4 E(85289): 1.1e-173
Smith-Waterman score: 2649; 94.0% identity (94.0% similar) in 434 aa overlap (1-408:1-434)
10 20 30 40 50 60
pF1KE4 MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 HNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 RHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNN
310 320 330 340 350 360
370 380 390
pF1KE4 MTLINLLLKVLGPIHERNLTLLLLLLQ--------------------------ILGSAIT
::::::::::::::::::::::::::: :::::::
XP_005 MTLINLLLKVLGPIHERNLTLLLLLLQVRMGIEFIPPCLPFCVILTPVHFSLQILGSAIT
370 380 390 400 410 420
400
pF1KE4 FSIRYQLVRLFYDV
::::::::::::::
XP_005 FSIRYQLVRLFYDV
430
>>XP_016872782 (OMIM: 191350,608093,614750) PREDICTED: U (301 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 2480.0 bits: 467.4 E(85289): 2.1e-131
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 301 aa overlap (108-408:1-301)
80 90 100 110 120 130
pF1KE4 FLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLL
::::::::::::::::::::::::::::::
XP_016 MIFLGFADDVLNLRWRHKLLLPTAASLPLL
10 20 30
140 150 160 170 180 190
pF1KE4 MVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQ
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE4 SLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYF
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE4 AGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPRLNIKTGKLEMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPRLNIKTGKLEMS
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE4 YSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNNMTLINLLLKVLGPIHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNNMTLINLLLKVLGPIHER
220 230 240 250 260 270
380 390 400
pF1KE4 NLTLLLLLLQILGSAITFSIRYQLVRLFYDV
:::::::::::::::::::::::::::::::
XP_016 NLTLLLLLLQILGSAITFSIRYQLVRLFYDV
280 290 300
>>XP_011540950 (OMIM: 191350,608093,614750) PREDICTED: U (327 aa)
initn: 1853 init1: 1853 opt: 1853 Z-score: 2322.9 bits: 438.4 E(85289): 1.2e-122
Smith-Waterman score: 1916; 92.0% identity (92.0% similar) in 327 aa overlap (108-408:1-327)
80 90 100 110 120 130
pF1KE4 FLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLL
::::::::::::::::::::::::::::::
XP_011 MIFLGFADDVLNLRWRHKLLLPTAASLPLL
10 20 30
140 150 160 170 180 190
pF1KE4 MVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQ
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE4 SLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYF
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE4 AGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPRLNIKTGKLEMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPRLNIKTGKLEMS
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE4 YSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNNMTLINLLLKVLGPIHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNNMTLINLLLKVLGPIHER
220 230 240 250 260 270
380 390 400
pF1KE4 NLTLLLLLLQ--------------------------ILGSAITFSIRYQLVRLFYDV
:::::::::: :::::::::::::::::::::
XP_011 NLTLLLLLLQVRMGIEFIPPCLPFCVILTPVHFSLQILGSAITFSIRYQLVRLFYDV
280 290 300 310 320
>>XP_016872783 (OMIM: 191350,608093,614750) PREDICTED: U (242 aa)
initn: 1625 init1: 1625 opt: 1625 Z-score: 2039.2 bits: 385.5 E(85289): 7.6e-107
Smith-Waterman score: 1625; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KE4 MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 HNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCP
::
XP_016 HN
>>XP_016872784 (OMIM: 191350,608093,614750) PREDICTED: U (236 aa)
initn: 1542 init1: 1542 opt: 1542 Z-score: 1935.4 bits: 366.2 E(85289): 4.6e-101
Smith-Waterman score: 1542; 100.0% identity (100.0% similar) in 236 aa overlap (173-408:1-236)
150 160 170 180 190 200
pF1KE4 NFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVIS
::::::::::::::::::::::::::::::
XP_016 MGLLAVFCTNAINILAGINGLEAGQSLVIS
10 20 30
210 220 230 240 250 260
pF1KE4 ASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYFAGMTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYFAGMTF
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE4 AVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPRLNIKTGKLEMSYSKFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPRLNIKTGKLEMSYSKFK
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE4 TKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNNMTLINLLLKVLGPIHERNLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNNMTLINLLLKVLGPIHERNLTLL
160 170 180 190 200 210
390 400
pF1KE4 LLLLQILGSAITFSIRYQLVRLFYDV
::::::::::::::::::::::::::
XP_016 LLLLQILGSAITFSIRYQLVRLFYDV
220 230
408 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:57:01 2016 done: Sat Nov 5 22:57:02 2016
Total Scan time: 8.120 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]