FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4363, 381 aa
  1>>>pF1KE4363 381 - 381 aa - 381 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2616+/-0.000764; mu= 13.9753+/- 0.046
 mean_var=110.4243+/-22.513, 0's: 0 Z-trim(112.9): 6  B-trim: 271 in 1/49
 Lambda= 0.122051
 statistics sampled from 13556 (13561) to 13556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.417), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS1983.2 SFTPB gene_id:6439|Hs108|chr2           ( 393) 2721 489.4 2.4e-138


>>CCDS1983.2 SFTPB gene_id:6439|Hs108|chr2                (393 aa)
 initn: 2721 init1: 2721 opt: 2721  Z-score: 2597.3  bits: 489.4 E(32554): 2.4e-138
Smith-Waterman score: 2721; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:13-393)

                           10        20        30        40        
pF1KE4             MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MHQAGYPGCRGAMAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQ
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KE4 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 CRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLL
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KE4 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MPQCNQVLDDYFPLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPL
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KE4 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALA
              190       200       210       220       230       240

      230       240       250       260       270       280        
pF1KE4 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSP
              250       260       270       280       290       300

      290       300       310       320       330       340        
pF1KE4 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 TGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLT
              310       320       330       340       350       360

      350       360       370       380 
pF1KE4 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL
       :::::::::::::::::::::::::::::::::
CCDS19 LVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL
              370       380       390   




381 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:03:22 2016 done: Sun Nov  6 02:03:22 2016
 Total Scan time:  2.890 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]