Result of FASTA (omim) for
pFN21AE4361
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4361, 380 aa
1>>>pF1KE4361 380 - 380 aa - 380 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2774+/-0.000444; mu= 5.0498+/- 0.028
mean_var=314.1952+/-65.383, 0's: 0 Z-trim(119.3): 232 B-trim: 0 in 0/57
Lambda= 0.072356
statistics sampled from 32846 (33087) to 32846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.388), width: 16
Scan time: 8.610
The best scores are: opt bits E(85289)
NP_002895 (OMIM: 154040) negative elongation facto ( 380) 2537 278.5 1.8e-74
XP_006715268 (OMIM: 154040) PREDICTED: negative el ( 375) 2489 273.5 5.7e-73
XP_011513215 (OMIM: 154040) PREDICTED: negative el ( 325) 2205 243.8 4.4e-64
XP_016866788 (OMIM: 154040) PREDICTED: negative el ( 320) 2157 238.7 1.4e-62
XP_011535347 (OMIM: 612427) PREDICTED: RNA-binding ( 638) 300 45.3 0.00048
XP_005266369 (OMIM: 616453) PREDICTED: zinc finger (1564) 307 46.5 0.00049
NP_055885 (OMIM: 616453) zinc finger CCCH domain-c (1564) 307 46.5 0.00049
NP_001317495 (OMIM: 616453) zinc finger CCCH domai (1668) 307 46.6 0.00051
NP_001317494 (OMIM: 616453) zinc finger CCCH domai (1668) 307 46.6 0.00051
NP_001317496 (OMIM: 616453) zinc finger CCCH domai (1668) 307 46.6 0.00051
NP_001317493 (OMIM: 616453) zinc finger CCCH domai (1669) 307 46.6 0.00051
NP_001070256 (OMIM: 616453) zinc finger CCCH domai (1669) 307 46.6 0.00051
XP_005266367 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051
XP_016875968 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051
XP_016875967 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051
XP_016875969 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051
XP_016875966 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051
XP_011535346 (OMIM: 612427) PREDICTED: RNA-binding ( 843) 300 45.5 0.00057
NP_067062 (OMIM: 612427) RNA-binding protein 25 [H ( 843) 300 45.5 0.00057
XP_005266364 (OMIM: 616453) PREDICTED: zinc finger (1696) 294 45.2 0.0013
XP_005266361 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013
XP_016875965 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013
XP_005266360 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013
XP_016875964 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013
XP_005266362 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013
XP_005266363 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013
XP_005266358 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013
XP_005266359 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013
XP_016864545 (OMIM: 609268) PREDICTED: splicing re ( 359) 273 42.1 0.0024
NP_001310463 (OMIM: 609268) splicing regulatory gl ( 359) 273 42.1 0.0024
XP_011541473 (OMIM: 609268) PREDICTED: splicing re ( 508) 275 42.6 0.0026
NP_631907 (OMIM: 609268) splicing regulatory gluta ( 508) 275 42.6 0.0026
NP_001310456 (OMIM: 609268) splicing regulatory gl ( 508) 275 42.6 0.0026
NP_001310462 (OMIM: 609268) splicing regulatory gl ( 538) 275 42.6 0.0026
NP_001070667 (OMIM: 609268) splicing regulatory gl ( 624) 275 42.7 0.0029
XP_011525542 (OMIM: 180740) PREDICTED: U1 small nu ( 345) 263 41.1 0.0048
XP_011526811 (OMIM: 604140) PREDICTED: death-induc (2240) 277 43.6 0.0054
NP_001180298 (OMIM: 604140) death-inducer oblitera (2240) 277 43.6 0.0054
NP_149072 (OMIM: 604140) death-inducer obliterator (2240) 277 43.6 0.0054
XP_011526806 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054
XP_011526810 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054
XP_011526809 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054
XP_011526807 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054
XP_011526808 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054
NP_003080 (OMIM: 180740) U1 small nuclear ribonucl ( 437) 263 41.2 0.0056
NP_001310464 (OMIM: 609268) splicing regulatory gl ( 358) 254 40.2 0.0095
XP_011509248 (OMIM: 607380,616629) PREDICTED: TRAF ( 701) 259 41.1 0.0098
>>NP_002895 (OMIM: 154040) negative elongation factor E (380 aa)
initn: 2537 init1: 2537 opt: 2537 Z-score: 1458.1 bits: 278.5 E(85289): 1.8e-74
Smith-Waterman score: 2537; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)
10 20 30 40 50 60
pF1KE4 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD
310 320 330 340 350 360
370 380
pF1KE4 KRTQIVYSDDVYKENLVDGF
::::::::::::::::::::
NP_002 KRTQIVYSDDVYKENLVDGF
370 380
>>XP_006715268 (OMIM: 154040) PREDICTED: negative elonga (375 aa)
initn: 2003 init1: 1675 opt: 2489 Z-score: 1431.0 bits: 273.5 E(85289): 5.7e-73
Smith-Waterman score: 2489; 98.7% identity (98.7% similar) in 380 aa overlap (1-380:1-375)
10 20 30 40 50 60
pF1KE4 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_006 QESSRRPQRKSLYES-----DRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA
130 140 150 160 170
190 200 210 220 230 240
pF1KE4 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE4 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE4 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD
300 310 320 330 340 350
370 380
pF1KE4 KRTQIVYSDDVYKENLVDGF
::::::::::::::::::::
XP_006 KRTQIVYSDDVYKENLVDGF
360 370
>>XP_011513215 (OMIM: 154040) PREDICTED: negative elonga (325 aa)
initn: 2205 init1: 2205 opt: 2205 Z-score: 1271.5 bits: 243.8 E(85289): 4.4e-64
Smith-Waterman score: 2205; 100.0% identity (100.0% similar) in 325 aa overlap (56-380:1-325)
30 40 50 60 70 80
pF1KE4 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSG
::::::::::::::::::::::::::::::
XP_011 MDTATATEQAKQLVKSGAISAIKAETKNSG
10 20 30
90 100 110 120 130 140
pF1KE4 FKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRE
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE4 LGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERD
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE4 RDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLY
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE4 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL
220 230 240 250 260 270
330 340 350 360 370 380
pF1KE4 KVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF
280 290 300 310 320
>>XP_016866788 (OMIM: 154040) PREDICTED: negative elonga (320 aa)
initn: 1675 init1: 1675 opt: 2157 Z-score: 1244.5 bits: 238.7 E(85289): 1.4e-62
Smith-Waterman score: 2157; 98.5% identity (98.5% similar) in 325 aa overlap (56-380:1-320)
30 40 50 60 70 80
pF1KE4 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSG
::::::::::::::::::::::::::::::
XP_016 MDTATATEQAKQLVKSGAISAIKAETKNSG
10 20 30
90 100 110 120 130 140
pF1KE4 FKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRE
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_016 FKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYES-----DRLRE
40 50 60 70 80
150 160 170 180 190 200
pF1KE4 LGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERD
90 100 110 120 130 140
210 220 230 240 250 260
pF1KE4 RDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLY
150 160 170 180 190 200
270 280 290 300 310 320
pF1KE4 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL
210 220 230 240 250 260
330 340 350 360 370 380
pF1KE4 KVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF
270 280 290 300 310 320
>>XP_011535347 (OMIM: 612427) PREDICTED: RNA-binding pro (638 aa)
initn: 297 init1: 297 opt: 300 Z-score: 193.6 bits: 45.3 E(85289): 0.00048
Smith-Waterman score: 311; 31.4% identity (60.1% similar) in 188 aa overlap (75-260:15-195)
50 60 70 80 90 100
pF1KE4 GVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNS-GFKRSRTLEGKLKDPEKGP
: ..: ...: . :.. : : .. :
XP_011 MIKGAIEVLIREYSSELNAPSQESDSHPRKKKKEKKEDIFRRFP
10 20 30 40
110 120 130 140 150 160
pF1KE4 VPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPP
: . :. . . .:.. . ....: .: ..:. :: .: .
XP_011 VAPLIPYP--LITKEDINAIEMEEDKRDLISREIS---KFRDTHKKLEEEKGKKEKER--
50 60 70 80 90
170 180 190 200 210 220
pF1KE4 RSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRD
. .. .:: . : : :.: .::.:.....:::.:.::::::: ..::::::
XP_011 QEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRD
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE4 RDRDRERDRDRERDRDRDREGPFRRS-DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSP
:.:::.:::.: ::..:: ..: : ::. :.
XP_011 RERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERERERERERE
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE4 FGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGK
XP_011 REREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAERE
220 230 240 250 260 270
>>XP_005266369 (OMIM: 616453) PREDICTED: zinc finger CCC (1564 aa)
initn: 1012 init1: 280 opt: 307 Z-score: 193.4 bits: 46.5 E(85289): 0.00049
Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754)
40 50 60 70 80 90
pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL
:... ... . . ..: .:. . :::
XP_005 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR--
510 520 530 540 550 560
100 110 120 130 140
pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD
:.. . :::: . : :.... ..: .: :.: . .. :: .
XP_005 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE
570 580 590 600 610 620
150 160 170 180 190
pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH
: :. . :. . :.. : . : ::: . .. :.: ::: .
XP_005 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER
630 640 650 660 670 680
200 210 220 230 240
pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS-
::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .:
XP_005 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER
690 700 710 720 730 740
250 260 270 280 290 300
pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD
: ::. :.
XP_005 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK
750 760 770 780 790 800
>>NP_055885 (OMIM: 616453) zinc finger CCCH domain-conta (1564 aa)
initn: 1012 init1: 280 opt: 307 Z-score: 193.4 bits: 46.5 E(85289): 0.00049
Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754)
40 50 60 70 80 90
pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL
:... ... . . ..: .:. . :::
NP_055 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR--
510 520 530 540 550 560
100 110 120 130 140
pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD
:.. . :::: . : :.... ..: .: :.: . .. :: .
NP_055 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE
570 580 590 600 610 620
150 160 170 180 190
pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH
: :. . :. . :.. : . : ::: . .. :.: ::: .
NP_055 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER
630 640 650 660 670 680
200 210 220 230 240
pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS-
::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .:
NP_055 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER
690 700 710 720 730 740
250 260 270 280 290 300
pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD
: ::. :.
NP_055 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK
750 760 770 780 790 800
>>NP_001317495 (OMIM: 616453) zinc finger CCCH domain-co (1668 aa)
initn: 1012 init1: 280 opt: 307 Z-score: 193.1 bits: 46.6 E(85289): 0.00051
Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754)
40 50 60 70 80 90
pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL
:... ... . . ..: .:. . :::
NP_001 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR--
510 520 530 540 550 560
100 110 120 130 140
pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD
:.. . :::: . : :.... ..: .: :.: . .. :: .
NP_001 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE
570 580 590 600 610 620
150 160 170 180 190
pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH
: :. . :. . :.. : . : ::: . .. :.: ::: .
NP_001 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER
630 640 650 660 670 680
200 210 220 230 240
pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS-
::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .:
NP_001 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER
690 700 710 720 730 740
250 260 270 280 290 300
pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD
: ::. :.
NP_001 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK
750 760 770 780 790 800
>>NP_001317494 (OMIM: 616453) zinc finger CCCH domain-co (1668 aa)
initn: 1012 init1: 280 opt: 307 Z-score: 193.1 bits: 46.6 E(85289): 0.00051
Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754)
40 50 60 70 80 90
pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL
:... ... . . ..: .:. . :::
NP_001 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR--
510 520 530 540 550 560
100 110 120 130 140
pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD
:.. . :::: . : :.... ..: .: :.: . .. :: .
NP_001 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE
570 580 590 600 610 620
150 160 170 180 190
pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH
: :. . :. . :.. : . : ::: . .. :.: ::: .
NP_001 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER
630 640 650 660 670 680
200 210 220 230 240
pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS-
::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .:
NP_001 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER
690 700 710 720 730 740
250 260 270 280 290 300
pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD
: ::. :.
NP_001 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK
750 760 770 780 790 800
>>NP_001317496 (OMIM: 616453) zinc finger CCCH domain-co (1668 aa)
initn: 1012 init1: 280 opt: 307 Z-score: 193.1 bits: 46.6 E(85289): 0.00051
Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754)
40 50 60 70 80 90
pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL
:... ... . . ..: .:. . :::
NP_001 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR--
510 520 530 540 550 560
100 110 120 130 140
pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD
:.. . :::: . : :.... ..: .: :.: . .. :: .
NP_001 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE
570 580 590 600 610 620
150 160 170 180 190
pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH
: :. . :. . :.. : . : ::: . .. :.: ::: .
NP_001 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER
630 640 650 660 670 680
200 210 220 230 240
pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS-
::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .:
NP_001 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER
690 700 710 720 730 740
250 260 270 280 290 300
pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD
: ::. :.
NP_001 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK
750 760 770 780 790 800
380 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:32:42 2016 done: Thu Nov 3 06:32:44 2016
Total Scan time: 8.610 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]