FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4360, 379 aa
  1>>>pF1KE4360 379 - 379 aa - 379 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3349+/-0.000319; mu= 18.1987+/- 0.020
 mean_var=92.0702+/-18.617, 0's: 0 Z-trim(118.3): 10  B-trim: 45 in 1/51
 Lambda= 0.133664
 statistics sampled from 31042 (31051) to 31042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.364), width:  16
 Scan time:  8.370

The best scores are:                                      opt bits E(85289)
NP_000146 (OMIM: 230400,606999) galactose-1-phosph ( 379) 2663 523.3 3.6e-148
NP_001245261 (OMIM: 230400,606999) galactose-1-pho ( 270) 1763 349.6 4.9e-96


>>NP_000146 (OMIM: 230400,606999) galactose-1-phosphate   (379 aa)
 initn: 2663 init1: 2663 opt: 2663  Z-score: 2781.2  bits: 523.3 E(85289): 3.6e-148
Smith-Waterman score: 2663; 99.7% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE4 MSRSGTDPQQRQQASEADAAAATFRANDHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSRSGTDPQQRQQASEADAAAATFRANDHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LLKTVPRHDPLNPLCPGAIRANGEVNPQYDSTFLFDNDFPALQPDAPSPGPSDHPLFQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LLKTVPRHDPLNPLCPGAIRANGEVNPQYDSTFLFDNDFPALQPDAPSPGPSDHPLFQAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWASVTEELGAQYPWVQIFENKGAMMGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWASVTEELGAQYPWVQIFENKGAMMGC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEPLLMEYSRQELLRKERLVLTSEHWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEPLLMEYSRQELLRKERLVLTSEHWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLASIMKKLLTKYDNLFETSFPYSMGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLASIMKKLLTKYDNLFETSFPYSMGW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 HGAPTGSEAGANWDHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDLTPEQAAERLRA
       :::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HGAPTGSEAGANWNHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDLTPEQAAERLRA
              310       320       330       340       350       360

              370         
pF1KE4 LPEVHYHLGQKDRETATIA
       :::::::::::::::::::
NP_000 LPEVHYHLGQKDRETATIA
              370         

>>NP_001245261 (OMIM: 230400,606999) galactose-1-phospha  (270 aa)
 initn: 1763 init1: 1763 opt: 1763  Z-score: 1845.1  bits: 349.6 E(85289): 4.9e-96
Smith-Waterman score: 1763; 99.6% identity (100.0% similar) in 253 aa overlap (127-379:18-270)

        100       110       120       130       140       150      
pF1KE4 NDFPALQPDAPSPGPSDHPLFQAKSARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWAS
                                     ::::::::::::::::::::::::::::::
NP_001              MTLSTLCVLGPSEPTESKVMCFHPWSDVTLPLMSVPEIRAVVDAWAS
                            10        20        30        40       

        160       170       180       190       200       210      
pF1KE4 VTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEP
        50        60        70        80        90       100       

        220       230       240       250       260       270      
pF1KE4 LLMEYSRQELLRKERLVLTSEHWLVLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLMEYSRQELLRKERLVLTSEHWLVLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLA
       110       120       130       140       150       160       

        280       290       300       310       320       330      
pF1KE4 SIMKKLLTKYDNLFETSFPYSMGWHGAPTGSEAGANWDHWQLHAHYYPPLLRSATVRKFM
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_001 SIMKKLLTKYDNLFETSFPYSMGWHGAPTGSEAGANWNHWQLHAHYYPPLLRSATVRKFM
       170       180       190       200       210       220       

        340       350       360       370         
pF1KE4 VGYEMLAQAQRDLTPEQAAERLRALPEVHYHLGQKDRETATIA
       :::::::::::::::::::::::::::::::::::::::::::
NP_001 VGYEMLAQAQRDLTPEQAAERLRALPEVHYHLGQKDRETATIA
       230       240       250       260       270




379 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:07:45 2016 done: Sat Nov  5 23:07:46 2016
 Total Scan time:  8.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]