Result of FASTA (omim) for
pFN21AE4349
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4349, 364 aa
1>>>pF1KE4349 364 - 364 aa - 364 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6917+/-0.000447; mu= -9.0323+/- 0.028
mean_var=274.2677+/-55.526, 0's: 0 Z-trim(118.3): 39 B-trim: 1325 in 2/58
Lambda= 0.077444
statistics sampled from 31112 (31151) to 31112 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.365), width: 16
Scan time: 7.460
The best scores are: opt bits E(85289)
NP_001166864 (OMIM: 147050,606518) hepatitis A vir ( 364) 2335 274.2 3.4e-73
NP_036338 (OMIM: 147050,606518) hepatitis A virus ( 364) 2335 274.2 3.4e-73
NP_001295085 (OMIM: 147050,606518) hepatitis A vir ( 401) 2057 243.1 8.1e-64
XP_016864829 (OMIM: 147050,606518) PREDICTED: hepa ( 352) 2050 242.3 1.3e-63
XP_016864828 (OMIM: 147050,606518) PREDICTED: hepa ( 400) 2040 241.2 3e-63
XP_011532817 (OMIM: 147050,606518) PREDICTED: hepa ( 244) 1010 126.0 8.8e-29
NP_001140198 (OMIM: 610096) T-cell immunoglobulin ( 350) 451 63.6 7.5e-10
XP_016865510 (OMIM: 610096) PREDICTED: T-cell immu ( 323) 449 63.4 8.2e-10
XP_011532996 (OMIM: 610096) PREDICTED: T-cell immu ( 299) 444 62.8 1.1e-09
NP_612388 (OMIM: 610096) T-cell immunoglobulin and ( 378) 444 62.9 1.4e-09
NP_116171 (OMIM: 606652) hepatitis A virus cellula ( 301) 344 51.7 2.6e-06
>>NP_001166864 (OMIM: 147050,606518) hepatitis A virus c (364 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1435.2 bits: 274.2 E(85289): 3.4e-73
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL
310 320 330 340 350 360
pF1KE4 YATD
::::
NP_001 YATD
>>NP_036338 (OMIM: 147050,606518) hepatitis A virus cell (364 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1435.2 bits: 274.2 E(85289): 3.4e-73
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL
310 320 330 340 350 360
pF1KE4 YATD
::::
NP_036 YATD
>>NP_001295085 (OMIM: 147050,606518) hepatitis A virus c (401 aa)
initn: 2052 init1: 2052 opt: 2057 Z-score: 1266.7 bits: 243.1 E(85289): 8.1e-64
Smith-Waterman score: 2057; 94.7% identity (97.3% similar) in 339 aa overlap (1-336:1-339)
10 20 30 40 50 60
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 CISVLVLLALLGVIIAKKYF---FKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIE
::::::::::::::::: . :: .. ..... .: :
NP_001 CISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKTQWCSL
310 320 330 340 350 360
360
pF1KE4 NSLYATD
NP_001 RVYAHECRRLNRHQHIRRLLDPKTIFLFQFHLAFQHVSDTG
370 380 390 400
>>XP_016864829 (OMIM: 147050,606518) PREDICTED: hepatiti (352 aa)
initn: 2050 init1: 2050 opt: 2050 Z-score: 1263.3 bits: 242.3 E(85289): 1.3e-63
Smith-Waterman score: 2050; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL
:::::::::::::::::
XP_016 CISVLVLLALLGVIIAKSTLEMLGKKLDLVHRWRNELHTQGLLCCPRWSTVA
310 320 330 340 350
>>XP_016864828 (OMIM: 147050,606518) PREDICTED: hepatiti (400 aa)
initn: 1465 init1: 1465 opt: 2040 Z-score: 1256.4 bits: 241.2 E(85289): 3e-63
Smith-Waterman score: 2040; 94.4% identity (97.1% similar) in 339 aa overlap (1-336:1-338)
10 20 30 40 50 60
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
XP_016 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEP-ATSPSSPQPAETHPT
190 200 210 220 230
250 260 270 280 290 300
pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
240 250 260 270 280 290
310 320 330 340 350
pF1KE4 CISVLVLLALLGVIIAKKYF---FKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIE
::::::::::::::::: . :: .. ..... .: :
XP_016 CISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKTQWCSL
300 310 320 330 340 350
360
pF1KE4 NSLYATD
XP_016 RVYAHECRRLNRHQHIRRLLDPKTIFLFQFHLAFQHVSDTG
360 370 380 390 400
>>XP_011532817 (OMIM: 147050,606518) PREDICTED: hepatiti (244 aa)
initn: 1005 init1: 1005 opt: 1010 Z-score: 637.7 bits: 126.0 E(85289): 8.8e-29
Smith-Waterman score: 1010; 90.1% identity (95.1% similar) in 182 aa overlap (158-336:1-182)
130 140 150 160 170 180
pF1KE4 KVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLTTMTVSTT
::::::::::::::::::::::::::::::
XP_011 MTTVPTTTVPTTMSIPTTTTVLTTMTVSTT
10 20 30
190 200 210 220 230 240
pF1KE4 TSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPTTLQGAIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPTTLQGAIR
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE4 REPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGVCISVLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGVCISVLVL
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE4 LALLGVIIAKKYF---FKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSLYATD
:::::::::: . :: .. ..... .: :
XP_011 LALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKTQWCSLRVYAHEC
160 170 180 190 200 210
XP_011 RRLNRHQHIRRLLDPKTIFLFQFHLAFQHVSDTG
220 230 240
>>NP_001140198 (OMIM: 610096) T-cell immunoglobulin and (350 aa)
initn: 383 init1: 345 opt: 451 Z-score: 297.8 bits: 63.6 E(85289): 7.5e-10
Smith-Waterman score: 460; 32.9% identity (57.8% similar) in 334 aa overlap (29-355:33-348)
10 20 30 40 50
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
: ::::: ::. .::::.. .:
NP_001 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
NP_001 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP--
.::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... :
NP_001 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL
130 140 150 160 170
180 190 200 210 220 230
pF1KE4 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPM--PLPRQNHEPVATSPSS
:: : : :... :.. : :. .: .: . : : :. . : : : :
NP_001 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 PQPAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTAN
. : :. . . :. : . :: : . ::. . .... . . :.
NP_001 SSVESTSADTVLLTSKASDTAVPEQNKTTK-----TGQMDGIPMSMKNEMPISQLLMIIA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE
. :. : ....: . : : .. . : .:... .. : : . : :.. . :
NP_001 PSLGF---VLFALFVAFLLRGKLM-ETYCSQKHTRLDYIGDS----KNVLNDVQHGREDE
300 310 320 330 340
360
pF1KE4 DNIYIENSLYATD
:...
NP_001 DGLFTL
350
>>XP_016865510 (OMIM: 610096) PREDICTED: T-cell immunogl (323 aa)
initn: 441 init1: 345 opt: 449 Z-score: 297.1 bits: 63.4 E(85289): 8.2e-10
Smith-Waterman score: 464; 40.2% identity (63.3% similar) in 229 aa overlap (29-252:33-250)
10 20 30 40 50
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
: ::::: ::. .::::.. .:
XP_016 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
XP_016 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP--
.::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... :
XP_016 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL
130 140 150 160 170
180 190 200 210 220 230
pF1KE4 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQ
:: : : :... :.. : :. : ...: .: .. : : ... :. :. :.
XP_016 TTGTPLQMTTIAVFTTANTCLSL-TPSTLPEEAT--GLLTPEP---SKEGPILTAASDTA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 PAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTT
: . :: : . : :
XP_016 VPEQNKTTKTGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCS
240 250 260 270 280 290
>>XP_011532996 (OMIM: 610096) PREDICTED: T-cell immunogl (299 aa)
initn: 357 init1: 357 opt: 444 Z-score: 294.6 bits: 62.8 E(85289): 1.1e-09
Smith-Waterman score: 446; 38.6% identity (60.2% similar) in 254 aa overlap (29-275:33-259)
10 20 30 40 50
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
: ::::: ::. .::::.. .:
XP_011 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
XP_011 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTT
.::.: :.. ..:: .:: :: ::.:: :::: :::.:. ..::
XP_011 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPA-------ALPT-
130 140 150 160
180 190 200 210 220 230
pF1KE4 TTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVP--PMPLPRQNHEPVATSPSSPQ
::.:: ..: : . :: . : ::..: . : ::.. ::. .:.
XP_011 -TVVTTPDLTTGTPLQMTT-------IAVFTTANTCLSLTPSTLPEE-----ATGLLTPE
170 180 190 200 210
240 250 260 270 280 290
pF1KE4 PAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESS--DGLWNNNQTQLFLEHSLLTAN
:.. : . :..: : . . ::: .: . .:.
XP_011 PSKEGPILTAESETVLPSDS-WSSVESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSV
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE
XP_011 SSPQPGEMSSHHVAQAGLKSLGLK
280 290
>>NP_612388 (OMIM: 610096) T-cell immunoglobulin and muc (378 aa)
initn: 357 init1: 357 opt: 444 Z-score: 293.1 bits: 62.9 E(85289): 1.4e-09
Smith-Waterman score: 446; 38.6% identity (60.2% similar) in 254 aa overlap (29-275:33-259)
10 20 30 40 50
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
: ::::: ::. .::::.. .:
NP_612 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
NP_612 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTT
.::.: :.. ..:: .:: :: ::.:: :::: :::.:. ..::
NP_612 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPA-------ALPT-
130 140 150 160
180 190 200 210 220 230
pF1KE4 TTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVP--PMPLPRQNHEPVATSPSSPQ
::.:: ..: : . :: . : ::..: . : ::.. ::. .:.
NP_612 -TVVTTPDLTTGTPLQMTT-------IAVFTTANTCLSLTPSTLPEE-----ATGLLTPE
170 180 190 200 210
240 250 260 270 280 290
pF1KE4 PAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESS--DGLWNNNQTQLFLEHSLLTAN
:.. : . :..: : . . ::: .: . .:.
NP_612 PSKEGPILTAESETVLPSDS-WSSVESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSV
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE
NP_612 SSPQPGASDTAVPEQNKTTKTGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFL
280 290 300 310 320 330
364 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:09:00 2016 done: Sun Nov 6 02:09:01 2016
Total Scan time: 7.460 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]