Result of FASTA (ccds) for
pFN21AE4349
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4349, 364 aa
1>>>pF1KE4349 364 - 364 aa - 364 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6383+/-0.00106; mu= -3.1495+/- 0.064
mean_var=233.8446+/-46.680, 0's: 0 Z-trim(110.3): 37 B-trim: 2 in 1/54
Lambda= 0.083871
statistics sampled from 11466 (11491) to 11466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.353), width: 16
Scan time: 2.450
The best scores are: opt bits E(32554)
CCDS43392.1 HAVCR1 gene_id:26762|Hs108|chr5 ( 364) 2335 295.4 5.2e-80
CCDS78076.1 HAVCR1 gene_id:26762|Hs108|chr5 ( 401) 2057 261.8 7.5e-70
CCDS54943.1 TIMD4 gene_id:91937|Hs108|chr5 ( 350) 451 67.4 2.1e-11
CCDS4332.1 TIMD4 gene_id:91937|Hs108|chr5 ( 378) 444 66.6 4e-11
>>CCDS43392.1 HAVCR1 gene_id:26762|Hs108|chr5 (364 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1550.0 bits: 295.4 E(32554): 5.2e-80
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIENSL
310 320 330 340 350 360
pF1KE4 YATD
::::
CCDS43 YATD
>>CCDS78076.1 HAVCR1 gene_id:26762|Hs108|chr5 (401 aa)
initn: 2052 init1: 2052 opt: 2057 Z-score: 1367.5 bits: 261.8 E(32554): 7.5e-70
Smith-Waterman score: 2057; 94.7% identity (97.3% similar) in 339 aa overlap (1-336:1-339)
10 20 30 40 50 60
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTSMCWNRGSCSLFTCQNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 IVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFNDMKITV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPSSPQPAETHPT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTANTTKGIYAGV
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 CISVLVLLALLGVIIAKKYF---FKKEVQQLSVSFSSLQIKALQNAVEKEVQAEDNIYIE
::::::::::::::::: . :: .. ..... .: :
CCDS78 CISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKTQWCSL
310 320 330 340 350 360
360
pF1KE4 NSLYATD
CCDS78 RVYAHECRRLNRHQHIRRLLDPKTIFLFQFHLAFQHVSDTG
370 380 390 400
>>CCDS54943.1 TIMD4 gene_id:91937|Hs108|chr5 (350 aa)
initn: 383 init1: 345 opt: 451 Z-score: 318.2 bits: 67.4 E(32554): 2.1e-11
Smith-Waterman score: 460; 32.9% identity (57.8% similar) in 334 aa overlap (29-355:33-348)
10 20 30 40 50
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
: ::::: ::. .::::.. .:
CCDS54 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
CCDS54 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP--
.::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... :
CCDS54 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL
130 140 150 160 170
180 190 200 210 220 230
pF1KE4 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPM--PLPRQNHEPVATSPSS
:: : : :... :.. : :. .: .: . : : :. . : : : :
CCDS54 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 PQPAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHSLLTAN
. : :. . . :. : . :: : . ::. . .... . . :.
CCDS54 SSVESTSADTVLLTSKASDTAVPEQNKTTK-----TGQMDGIPMSMKNEMPISQLLMIIA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE
. :. : ....: . : : .. . : .:... .. : : . : :.. . :
CCDS54 PSLGF---VLFALFVAFLLRGKLM-ETYCSQKHTRLDYIGDS----KNVLNDVQHGREDE
300 310 320 330 340
360
pF1KE4 DNIYIENSLYATD
:...
CCDS54 DGLFTL
350
>>CCDS4332.1 TIMD4 gene_id:91937|Hs108|chr5 (378 aa)
initn: 357 init1: 357 opt: 444 Z-score: 313.1 bits: 66.6 E(32554): 4e-11
Smith-Waterman score: 446; 38.6% identity (60.2% similar) in 254 aa overlap (29-275:33-259)
10 20 30 40 50
pF1KE4 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
: ::::: ::. .::::.. .:
CCDS43 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
CCDS43 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTT
.::.: :.. ..:: .:: :: ::.:: :::: :::.:. ..::
CCDS43 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPA-------ALPT-
130 140 150 160
180 190 200 210 220 230
pF1KE4 TTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVP--PMPLPRQNHEPVATSPSSPQ
::.:: ..: : . :: . : ::..: . : ::.. ::. .:.
CCDS43 -TVVTTPDLTTGTPLQMTT-------IAVFTTANTCLSLTPSTLPEE-----ATGLLTPE
170 180 190 200 210
240 250 260 270 280 290
pF1KE4 PAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESS--DGLWNNNQTQLFLEHSLLTAN
:.. : . :..: : . . ::: .: . .:.
CCDS43 PSKEGPILTAESETVLPSDS-WSSVESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSV
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE4 TTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEKEVQAE
CCDS43 SSPQPGASDTAVPEQNKTTKTGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFL
280 290 300 310 320 330
364 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:08:59 2016 done: Sun Nov 6 02:09:00 2016
Total Scan time: 2.450 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]