Result of FASTA (ccds) for
pFN21AE4344
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4344, 360 aa
1>>>pF1KE4344 360 - 360 aa - 360 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2098+/-0.000911; mu= 4.8044+/- 0.056
mean_var=156.4374+/-30.974, 0's: 0 Z-trim(111.2): 15 B-trim: 0 in 0/52
Lambda= 0.102543
statistics sampled from 12205 (12219) to 12205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.375), width: 16
Scan time: 3.000
The best scores are: opt bits E(32554)
CCDS14557.1 DCX gene_id:1641|Hs108|chrX ( 360) 2369 361.8 5e-100
CCDS14558.1 DCX gene_id:1641|Hs108|chrX ( 365) 2349 358.9 4e-99
CCDS83483.1 DCX gene_id:1641|Hs108|chrX ( 366) 2337 357.1 1.4e-98
CCDS9354.1 DCLK1 gene_id:9201|Hs108|chr13 ( 729) 1678 259.8 5.4e-69
CCDS81762.1 DCLK1 gene_id:9201|Hs108|chr13 ( 740) 1678 259.8 5.5e-69
CCDS47142.2 DCLK2 gene_id:166614|Hs108|chr4 ( 783) 1518 236.1 7.7e-62
CCDS34076.1 DCLK2 gene_id:166614|Hs108|chr4 ( 766) 1448 225.8 9.9e-59
>>CCDS14557.1 DCX gene_id:1641|Hs108|chrX (360 aa)
initn: 2369 init1: 2369 opt: 2369 Z-score: 1909.2 bits: 361.8 E(32554): 5e-100
Smith-Waterman score: 2369; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
310 320 330 340 350 360
>>CCDS14558.1 DCX gene_id:1641|Hs108|chrX (365 aa)
initn: 2086 init1: 2060 opt: 2349 Z-score: 1893.1 bits: 358.9 E(32554): 4e-99
Smith-Waterman score: 2349; 98.6% identity (98.6% similar) in 365 aa overlap (1-360:1-365)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS
310 320 330 340 350 360
360
pF1KE4 LGDSM
:::::
CCDS14 LGDSM
>>CCDS83483.1 DCX gene_id:1641|Hs108|chrX (366 aa)
initn: 2164 init1: 2060 opt: 2337 Z-score: 1883.5 bits: 357.1 E(32554): 1.4e-98
Smith-Waterman score: 2337; 98.4% identity (98.4% similar) in 366 aa overlap (1-360:1-366)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHK-DLYLPLSLDDSD
:::::::::: :::::::::::::::::::::::::::::::: ::::::::::::
CCDS83 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKVDLYLPLSLDDSD
310 320 330 340 350 360
360
pF1KE4 SLGDSM
::::::
CCDS83 SLGDSM
>>CCDS9354.1 DCLK1 gene_id:9201|Hs108|chr13 (729 aa)
initn: 1120 init1: 846 opt: 1678 Z-score: 1352.1 bits: 259.8 E(32554): 5.4e-69
Smith-Waterman score: 1678; 74.3% identity (90.2% similar) in 346 aa overlap (1-342:7-345)
10 20 30 40 50
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKK
:::. :::::::..: ::::.:::::::::::::::::::::.::.::::::
CCDS93 MSFGRDMELE--HFDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKK
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 VRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIG
:::::::::::::::::.: ::::::.::::::::.::::.::::::: :::::: .::.
CCDS93 VRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKIS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 SMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSA--QARE
:.:.: :::::::.: . :::.::::::::::::::::.. .: .:::..... ..::
CCDS93 SLDQLVEGESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 NKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLD
::::.:::::::::::::::::::.::::::::::::::::::.::::..::::.:::::
CCDS93 NKDFIRPKLVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 GKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQK
:::: ::.:::::::.::::::::::: :::: :::.::::.: .:. : . . ..
CCDS93 GKQVMCLQDFFGDDDIFIACGPEKFRY-QDDFLLDESECRVVK----STSYTKIASSSRR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 TSAKSPGPMRRSKSPAD--SANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSL
...::::: :::::::. :.::: .::::::.: .:: .:::::::::..
CCDS93 STTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQRSSQHGGSS
300 310 320 330 340 350
360
pF1KE4 DDSDSLGDSM
CCDS93 TSLASTKVCSSMDENDGPGEEVSEEGFQIPATITERYKVGRTIGDGNFAVVKECVERSTA
360 370 380 390 400 410
>>CCDS81762.1 DCLK1 gene_id:9201|Hs108|chr13 (740 aa)
initn: 1120 init1: 846 opt: 1678 Z-score: 1352.0 bits: 259.8 E(32554): 5.5e-69
Smith-Waterman score: 1678; 74.3% identity (90.2% similar) in 346 aa overlap (1-342:7-345)
10 20 30 40 50
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKK
:::. :::::::..: ::::.:::::::::::::::::::::.::.::::::
CCDS81 MSFGRDMELE--HFDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKK
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 VRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIG
:::::::::::::::::.: ::::::.::::::::.::::.::::::: :::::: .::.
CCDS81 VRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKIS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 SMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSA--QARE
:.:.: :::::::.: . :::.::::::::::::::::.. .: .:::..... ..::
CCDS81 SLDQLVEGESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 NKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLD
::::.:::::::::::::::::::.::::::::::::::::::.::::..::::.:::::
CCDS81 NKDFIRPKLVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 GKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQK
:::: ::.:::::::.::::::::::: :::: :::.::::.: .:. : . . ..
CCDS81 GKQVMCLQDFFGDDDIFIACGPEKFRY-QDDFLLDESECRVVK----STSYTKIASSSRR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 TSAKSPGPMRRSKSPAD--SANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSL
...::::: :::::::. :.::: .::::::.: .:: .:::::::::..
CCDS81 STTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQRSSQHGGSS
300 310 320 330 340 350
360
pF1KE4 DDSDSLGDSM
CCDS81 TSLASTKVCSSMDENDGPGEEVSEEGFQIPATITERYKVGRTIGDGNFAVVKECVERSTA
360 370 380 390 400 410
>>CCDS47142.2 DCLK2 gene_id:166614|Hs108|chr4 (783 aa)
initn: 1659 init1: 721 opt: 1518 Z-score: 1223.7 bits: 236.1 E(32554): 7.7e-62
Smith-Waterman score: 1532; 66.7% identity (81.3% similar) in 375 aa overlap (3-344:7-371)
10 20 30 40
pF1KE4 MELDFGHFDERDKTSR--NMRGS------------RMNGL-PSPTHSAHCSFYRTR
... ::.:::: : . ::. . ::: :::.:::::::::::
CCDS47 MASTRSIELEHFEERDKRPRPGSRRGAPSSSGGSSSSGPKGNGLIPSPAHSAHCSFYRTR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 TLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGV
::::::.::::::.::::::::::::.:.:.:::::::::::: .::::::::.::::::
CCDS47 TLQALSSEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLIELTRSLSDNVNLPQGV
70 80 90 100 110 120
110 120 130 140 150
pF1KE4 RYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVK--TSANMKAP
: :::::::::. :.::: :::::::.:.. :.::.::::.:::::::.: :: . :
CCDS47 RTIYTIDGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPNWSVNIKGGTSRALAA-
130 140 150 160 170
160 170 180 190 200 210
pF1KE4 QSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIK
::: .....:.:::..:::::.::::::::::::.::::::::::::::::::::::
CCDS47 ---ASSVKSEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSFEQVLTDITEAIK
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE4 LETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPS
:..::::.: ::::::::::.:::::::::::::::::::::::: ::..::::.:.. :
CCDS47 LDSGVVKRLCTLDGKQVTCLQDFFGDDDVFIACGPEKFRYAQDDFVLDHSECRVLKSSYS
240 250 260 270 280 290
280 290 300 310 320
pF1KE4 ATAGPKASPTPQKTSAKSPGPMRRSKSPAD--------SA--------NGTSSSQLSTPK
... : : ..::::: :::::::. :: ::: ::::::::
CCDS47 RSSAVKYS------GSKSPGPSRRSKSPASVKRGGHYSSAYSTAKSPVNGTPSSQLSTPK
300 310 320 330 340 350
330 340 350 360
pF1KE4 SKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
: .: :.::::::.: :..
CCDS47 STKSSSSSPTSPGSFRGLKQISAHGRSSSNVNGGPELDRCISPEGVNGNRCSESSTLLEK
360 370 380 390 400 410
>>CCDS34076.1 DCLK2 gene_id:166614|Hs108|chr4 (766 aa)
initn: 1654 init1: 719 opt: 1448 Z-score: 1167.9 bits: 225.8 E(32554): 9.9e-59
Smith-Waterman score: 1567; 69.4% identity (84.7% similar) in 359 aa overlap (3-344:7-354)
10 20 30 40
pF1KE4 MELDFGHFDERDKTSR--NMRGS------------RMNGL-PSPTHSAHCSFYRTR
... ::.:::: : . ::. . ::: :::.:::::::::::
CCDS34 MASTRSIELEHFEERDKRPRPGSRRGAPSSSGGSSSSGPKGNGLIPSPAHSAHCSFYRTR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 TLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGV
::::::.::::::.::::::::::::.:.:.:::::::::::: .::::::::.::::::
CCDS34 TLQALSSEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLIELTRSLSDNVNLPQGV
70 80 90 100 110 120
110 120 130 140 150
pF1KE4 RYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVK--TSANMKAP
: :::::::::. :.::: :::::::.:.. :.::.::::.:::::::.: :: . :
CCDS34 RTIYTIDGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPNWSVNIKGGTSRALAA-
130 140 150 160 170
160 170 180 190 200 210
pF1KE4 QSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIK
::: .....:.:::..:::::.::::::::::::.::::::::::::::::::::::
CCDS34 ---ASSVKSEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSFEQVLTDITEAIK
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE4 LETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPS
:..::::.: ::::::::::.:::::::::::::::::::::::: ::..::::.:.. :
CCDS34 LDSGVVKRLCTLDGKQVTCLQDFFGDDDVFIACGPEKFRYAQDDFVLDHSECRVLKSSYS
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE4 ATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLR
... : : ..::::: ::::::: :.::: ::::::::: .: :.::::::.:
CCDS34 RSSAVKYS------GSKSPGPSRRSKSPA-SVNGTPSSQLSTPKSTKSSSSSPTSPGSFR
300 310 320 330 340
340 350 360
pF1KE4 KHKDLYLPLSLDDSDSLGDSM
:..
CCDS34 GLKQISAHGRSSSNVNGGPELDRCISPEGVNGNRCSESSTLLEKYKIGKVIGDGNFAVVK
350 360 370 380 390 400
360 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:19:40 2016 done: Thu Nov 3 08:19:40 2016
Total Scan time: 3.000 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]