Result of FASTA (omim) for
pFN21AE4340
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4340, 351 aa
1>>>pF1KE4340 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9104+/-0.000459; mu= 18.1146+/- 0.029
mean_var=58.1619+/-11.494, 0's: 0 Z-trim(108.1): 44 B-trim: 0 in 0/53
Lambda= 0.168173
statistics sampled from 16181 (16205) to 16181 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.558), E-opt: 0.2 (0.19), width: 16
Scan time: 7.420
The best scores are: opt bits E(85289)
NP_004682 (OMIM: 607028) V-type proton ATPase subu ( 351) 2332 574.6 1.2e-163
XP_011521746 (OMIM: 607028) PREDICTED: V-type prot ( 274) 1835 453.9 1.9e-127
XP_011521747 (OMIM: 607028) PREDICTED: V-type prot ( 274) 1835 453.9 1.9e-127
XP_011521748 (OMIM: 607028) PREDICTED: V-type prot ( 274) 1835 453.9 1.9e-127
>>NP_004682 (OMIM: 607028) V-type proton ATPase subunit (351 aa)
initn: 2332 init1: 2332 opt: 2332 Z-score: 3059.3 bits: 574.6 E(85289): 1.2e-163
Smith-Waterman score: 2332; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)
10 20 30 40 50 60
pF1KE4 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF
310 320 330 340 350
>>XP_011521746 (OMIM: 607028) PREDICTED: V-type proton A (274 aa)
initn: 1835 init1: 1835 opt: 1835 Z-score: 2409.2 bits: 453.9 E(85289): 1.9e-127
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 274 aa overlap (78-351:1-274)
50 60 70 80 90 100
pF1KE4 HLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMID
::::::::::::::::::::::::::::::
XP_011 MVVEFRHMRNHAYEPLASFLDFITYSYMID
10 20 30
110 120 130 140 150 160
pF1KE4 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE4 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE4 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY
220 230 240 250 260 270
350
pF1KE4 IPIF
::::
XP_011 IPIF
>>XP_011521747 (OMIM: 607028) PREDICTED: V-type proton A (274 aa)
initn: 1835 init1: 1835 opt: 1835 Z-score: 2409.2 bits: 453.9 E(85289): 1.9e-127
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 274 aa overlap (78-351:1-274)
50 60 70 80 90 100
pF1KE4 HLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMID
::::::::::::::::::::::::::::::
XP_011 MVVEFRHMRNHAYEPLASFLDFITYSYMID
10 20 30
110 120 130 140 150 160
pF1KE4 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE4 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE4 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY
220 230 240 250 260 270
350
pF1KE4 IPIF
::::
XP_011 IPIF
>>XP_011521748 (OMIM: 607028) PREDICTED: V-type proton A (274 aa)
initn: 1835 init1: 1835 opt: 1835 Z-score: 2409.2 bits: 453.9 E(85289): 1.9e-127
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 274 aa overlap (78-351:1-274)
50 60 70 80 90 100
pF1KE4 HLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMID
::::::::::::::::::::::::::::::
XP_011 MVVEFRHMRNHAYEPLASFLDFITYSYMID
10 20 30
110 120 130 140 150 160
pF1KE4 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE4 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE4 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY
220 230 240 250 260 270
350
pF1KE4 IPIF
::::
XP_011 IPIF
351 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:11:31 2016 done: Sun Nov 6 02:11:32 2016
Total Scan time: 7.420 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]