FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4338, 350 aa
  1>>>pF1KE4338 350 - 350 aa - 350 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7955+/-0.000785; mu= 17.0471+/- 0.048
 mean_var=132.5971+/-25.002, 0's: 0 Z-trim(113.5): 22  B-trim: 0 in 0/52
 Lambda= 0.111380
 statistics sampled from 14140 (14157) to 14140 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.435), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS7808.1 DKK3 gene_id:27122|Hs108|chr11          ( 350) 2415 398.8 3.5e-111
CCDS81555.1 DKK3 gene_id:27122|Hs108|chr11         ( 364) 1953 324.6 8.1e-89


>>CCDS7808.1 DKK3 gene_id:27122|Hs108|chr11               (350 aa)
 initn: 2415 init1: 2415 opt: 2415  Z-score: 2109.5  bits: 398.8 E(32554): 3.5e-111
Smith-Waterman score: 2415; 99.7% identity (99.7% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KE4 MQRLGATLLCLLLAAAVPTAPAPAPTATSAPVKPGPALSYPQEEATLNEMFREVEELMED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MQRLGATLLCLLLAAAVPTAPAPAPTATSAPVKPGPALSYPQEEATLNEMFREVEELMED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 TQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSYHNETNTDTKVGNNTIHVHREIHKITN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSYHNETNTDTKVGNNTIHVHREIHKITN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 NQTGQMVFSETVITSVGDEEGRRSHECIIDEDCGPSMYCQFASFQYTCQPCRGQRMLCTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NQTGQMVFSETVITSVGDEEGRRSHECIIDEDCGPSMYCQFASFQYTCQPCRGQRMLCTR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DSECCGDQLCVWGHCTKMATRGSNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DSECCGDQLCVWGHCTKMATRGSNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 CHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCKPTFVGSRDQDGEILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 CHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCKPTFVGSRDQDGEILL
              250       260       270       280       290       300

              310       320       330       340       350
pF1KE4 PREVPDEYEVGSFMEEVRQELEDLERSLTEEMALGEPAAAAAALLGGEEI
       :::::::::::::::::::::::::::::::::: :::::::::::::::
CCDS78 PREVPDEYEVGSFMEEVRQELEDLERSLTEEMALREPAAAAAALLGGEEI
              310       320       330       340       350

>>CCDS81555.1 DKK3 gene_id:27122|Hs108|chr11              (364 aa)
 initn: 2401 init1: 1950 opt: 1953  Z-score: 1708.0  bits: 324.6 E(32554): 8.1e-89
Smith-Waterman score: 2377; 95.9% identity (95.9% similar) in 364 aa overlap (1-350:1-364)

               10        20        30        40        50        60
pF1KE4 MQRLGATLLCLLLAAAVPTAPAPAPTATSAPVKPGPALSYPQEEATLNEMFREVEELMED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MQRLGATLLCLLLAAAVPTAPAPAPTATSAPVKPGPALSYPQEEATLNEMFREVEELMED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 TQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSYHNETNTDTKVGNNTIHVHREIHKITN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSYHNETNTDTKVGNNTIHVHREIHKITN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 NQTGQMVFSETVITSVGDEEGRRSHECIIDEDCGPSMYCQFASFQYTCQPCRGQRMLCTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NQTGQMVFSETVITSVGDEEGRRSHECIIDEDCGPSMYCQFASFQYTCQPCRGQRMLCTR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DSECCGDQLCVWGHCTKMATRGSNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DSECCGDQLCVWGHCTKMATRGSNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGEL
              190       200       210       220       230       240

              250       260       270                     280      
pF1KE4 CHDPASRLLDLITWELEPDGALDRCPCASGLLCQPH--------------SHSLVYVCKP
       ::::::::::::::::::::::::::::::::::::              ::::::::::
CCDS81 CHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHRLPRLEPGFVPSLPSHSLVYVCKP
              250       260       270       280       290       300

        290       300       310       320       330       340      
pF1KE4 TFVGSRDQDGEILLPREVPDEYEVGSFMEEVRQELEDLERSLTEEMALGEPAAAAAALLG
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS81 TFVGSRDQDGEILLPREVPDEYEVGSFMEEVRQELEDLERSLTEEMALREPAAAAAALLG
              310       320       330       340       350       360

        350
pF1KE4 GEEI
       ::::
CCDS81 GEEI
           




350 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:15:07 2016 done: Sun Nov  6 09:15:08 2016
 Total Scan time:  2.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]