FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4337, 348 aa
  1>>>pF1KE4337 348 - 348 aa - 348 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1706+/-0.000917; mu= 16.8502+/- 0.055
 mean_var=63.8062+/-13.020, 0's: 0 Z-trim(105.0): 15  B-trim: 0 in 0/50
 Lambda= 0.160562
 statistics sampled from 8153 (8167) to 8153 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.251), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS242.1 GALE gene_id:2582|Hs108|chr1             ( 348) 2343 551.5 3.7e-157


>>CCDS242.1 GALE gene_id:2582|Hs108|chr1                  (348 aa)
 initn: 2343 init1: 2343 opt: 2343  Z-score: 2935.0  bits: 551.5 E(32554): 3.7e-157
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)

               10        20        30        40        50        60
pF1KE4 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR
              250       260       270       280       290       300

              310       320       330       340        
pF1KE4 EGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQA
              310       320       330       340        




348 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:12:36 2016 done: Sun Nov  6 02:12:37 2016
 Total Scan time:  2.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]