Result of FASTA (ccds) for
pFN21AE4336
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4336, 347 aa
1>>>pF1KE4336 347 - 347 aa - 347 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7253+/-0.000798; mu= 13.5339+/- 0.048
mean_var=61.7475+/-12.700, 0's: 0 Z-trim(107.3): 16 B-trim: 46 in 1/49
Lambda= 0.163217
statistics sampled from 9470 (9475) to 9470 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.291), width: 16
Scan time: 2.270
The best scores are: opt bits E(32554)
CCDS9122.1 DAO gene_id:1610|Hs108|chr12 ( 347) 2415 577.1 7.5e-165
CCDS5082.1 DDO gene_id:8528|Hs108|chr6 ( 369) 852 209.0 4.9e-54
CCDS5083.1 DDO gene_id:8528|Hs108|chr6 ( 310) 469 118.8 5.9e-27
>>CCDS9122.1 DAO gene_id:1610|Hs108|chr12 (347 aa)
initn: 2415 init1: 2415 opt: 2415 Z-score: 3073.1 bits: 577.1 E(32554): 7.5e-165
Smith-Waterman score: 2415; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP
250 260 270 280 290 300
310 320 330 340
pF1KE4 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL
310 320 330 340
>>CCDS5082.1 DDO gene_id:8528|Hs108|chr6 (369 aa)
initn: 716 init1: 334 opt: 852 Z-score: 1083.6 bits: 209.0 E(32554): 4.9e-54
Smith-Waterman score: 852; 39.6% identity (66.4% similar) in 351 aa overlap (2-347:33-369)
10 20 30
pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQP-L
:..:.::::.:::::.:: : : :
CCDS50 PARHWETRFGARDFGGFQDCFFRDRLMDTARIAVVGAGVVGLSTAVCI-----SKLVPRC
10 20 30 40 50
40 50 60 70 80
pF1KE4 DIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP--QEADWSQQTFDYLLSHVHSPNAENLG
.. . .:.::: ::.:::::. :. . :..: . .: ..::..:.. ..: .: . :
CCDS50 SVTIISDKFTPDTTSDVAAGMLIPH-TYPDTPIHTQKQWFRETFNHLFAIANSAEAGDAG
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE4 LFLISGYNLFHEAIPD--PSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQ
. :.::...:. . . : : :.::::::.: :: ::.: .: :.: : ::
CCDS50 VHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFPQYVFGQAFTTLKCECPAYLP
120 130 140 150 160 170
150 160 170 180 190 200
pF1KE4 WLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVD
:: .:. : . :..:.. :. . . :..:::.:. . : : . : :::...:.
CCDS50 WLEKRIKGSGGWTLTRRIEDLWEL-HPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQ
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE4 APWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRL
:::..::: : . :: :::. ::::: : :.:. . .. : :: :
CCDS50 APWVEHFI------RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCAL
240 250 260 270 280
270 280 290 300 310 320
pF1KE4 EPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEA
::.:..: : :..:.:: :: .::. : : . :.:.::::. :...::: ::::
CCDS50 EPSLHGACNIREKVGLRPYRPGVRLQTELLARDGQRLPVVHHYGHGSGGISVHWGTALEA
290 300 310 320 330 340
330 340
pF1KE4 AKLFGRILEEKKLSRMPPSHL
:.: .. .. . . .: :.:
CCDS50 ARLVSECVHALR-TPIPKSNL
350 360
>>CCDS5083.1 DDO gene_id:8528|Hs108|chr6 (310 aa)
initn: 600 init1: 334 opt: 469 Z-score: 597.5 bits: 118.8 E(32554): 5.9e-27
Smith-Waterman score: 588; 33.5% identity (57.0% similar) in 349 aa overlap (2-347:33-310)
10 20 30
pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQP-L
:..:.::::.:::::.:: : : :
CCDS50 PARHWETRFGARDFGGFQDCFFRDRLMDTARIAVVGAGVVGLSTAVCI-----SKLVPRC
10 20 30 40 50
40 50 60 70 80
pF1KE4 DIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP--QEADWSQQTFDYLLSHVHSPNAENLG
.. . .:.::: ::.:::::. :. . :..: . .: ..::..:.. ..: .: . :
CCDS50 SVTIISDKFTPDTTSDVAAGMLIPH-TYPDTPIHTQKQWFRETFNHLFAIANSAEAGDAG
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE4 LFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWL
. :.:: . : . :: :
CCDS50 VHLVSG----------------IKG---------------SGGWTLT-------------
120 130
150 160 170 180 190 200
pF1KE4 TERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAP
:..:.. :. . . :..:::.:. . : : . : :::...:.::
CCDS50 -------------RRIEDLWEL-HPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAP
140 150 160 170
210 220 230 240 250 260
pF1KE4 WMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEP
:..::: : . :: :::. ::::: : :.:. . .. : :: :::
CCDS50 WVEHFI------RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEP
180 190 200 210 220 230
270 280 290 300 310 320
pF1KE4 TLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAK
.:..: : :..:.:: :: .::. : : . :.:.::::. :...::: :::::.
CCDS50 SLHGACNIREKVGLRPYRPGVRLQTELLARDGQRLPVVHHYGHGSGGISVHWGTALEAAR
240 250 260 270 280 290
330 340
pF1KE4 LFGRILEEKKLSRMPPSHL
: .. .. . . .: :.:
CCDS50 LVSECVHALR-TPIPKSNL
300 310
347 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:13:15 2016 done: Sun Nov 6 02:13:15 2016
Total Scan time: 2.270 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]