FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4330, 338 aa
  1>>>pF1KE4330 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6815+/-0.000895; mu= 13.6901+/- 0.054
 mean_var=62.7311+/-12.501, 0's: 0 Z-trim(105.5): 16  B-trim: 3 in 1/50
 Lambda= 0.161932
 statistics sampled from 8461 (8468) to 8461 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.26), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS7097.1 PHYH gene_id:5264|Hs108|chr10           ( 338) 2304 546.9 8.6e-156
CCDS41489.1 PHYH gene_id:5264|Hs108|chr10          ( 238) 1653 394.8 3.8e-110


>>CCDS7097.1 PHYH gene_id:5264|Hs108|chr10                (338 aa)
 initn: 2304 init1: 2304 opt: 2304  Z-score: 2910.4  bits: 546.9 E(32554): 8.6e-156
Smith-Waterman score: 2304; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KE4 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI
              250       260       270       280       290       300

              310       320       330        
pF1KE4 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
       ::::::::::::::::::::::::::::::::::::::
CCDS70 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
              310       320       330        

>>CCDS41489.1 PHYH gene_id:5264|Hs108|chr10               (238 aa)
 initn: 1653 init1: 1653 opt: 1653  Z-score: 2091.0  bits: 394.8 E(32554): 3.8e-110
Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 238 aa overlap (101-338:1-238)

               80        90       100       110       120       130
pF1KE4 NLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKEL
                                     ::::::::::::::::::::::::::::::
CCDS41                               MRDVTISKSEYAPSEKMITKVQDFQEDKEL
                                             10        20        30

              140       150       160       170       180       190
pF1KE4 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV
               40        50        60        70        80        90

              200       210       220       230       240       250
pF1KE4 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM
              100       110       120       130       140       150

              260       270       280       290       300       310
pF1KE4 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK
              160       170       180       190       200       210

              320       330        
pF1KE4 FFGAENSVNLKDIWMFRARLVKGERTNL
       ::::::::::::::::::::::::::::
CCDS41 FFGAENSVNLKDIWMFRARLVKGERTNL
              220       230        




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:08:56 2016 done: Sat Nov  5 23:08:57 2016
 Total Scan time:  2.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]