FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4321, 325 aa
  1>>>pF1KE4321 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2395+/-0.000712; mu= 17.6066+/- 0.043
 mean_var=79.2391+/-15.832, 0's: 0 Z-trim(111.5): 5  B-trim: 195 in 1/50
 Lambda= 0.144080
 statistics sampled from 12403 (12404) to 12403 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.381), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS6415.1 CYC1 gene_id:1537|Hs108|chr8            ( 325) 2202 466.7 1.1e-131


>>CCDS6415.1 CYC1 gene_id:1537|Hs108|chr8                 (325 aa)
 initn: 2202 init1: 2202 opt: 2202  Z-score: 2477.4  bits: 466.7 E(32554): 1.1e-131
Smith-Waterman score: 2202; 99.7% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KE4 MAAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MAAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LSALGMLAAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQV
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LSALGMLAAGGAGLAMALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 CASCHSMDFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 CASCHSMDFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 NSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 NSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 AIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLV
              250       260       270       280       290       300

              310       320     
pF1KE4 PLVYTIKRHKWSVLKSRKLAYRPPK
       :::::::::::::::::::::::::
CCDS64 PLVYTIKRHKWSVLKSRKLAYRPPK
              310       320     




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:10:41 2016 done: Sat Nov  5 23:10:42 2016
 Total Scan time:  2.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]