FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4317, 323 aa
  1>>>pF1KE4317 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2628+/-0.00071; mu= 16.4734+/- 0.043
 mean_var=74.9777+/-14.263, 0's: 0 Z-trim(110.8): 31  B-trim: 43 in 1/52
 Lambda= 0.148118
 statistics sampled from 11834 (11863) to 11834 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.364), width:  16
 Scan time:  2.620

The best scores are:                                      opt bits E(32554)
CCDS609.1 TACSTD2 gene_id:4070|Hs108|chr1          ( 323) 2176 473.9 7.3e-134
CCDS1833.1 EPCAM gene_id:4072|Hs108|chr2           ( 314) 1013 225.4 4.6e-59


>>CCDS609.1 TACSTD2 gene_id:4070|Hs108|chr1               (323 aa)
 initn: 2176 init1: 2176 opt: 2176  Z-score: 2516.7  bits: 473.9 E(32554): 7.3e-134
Smith-Waterman score: 2176; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KE4 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 GLDLRVRGEPLQVERTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GLDLRVRGEPLQVERTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNR
              250       260       270       280       290       300

              310       320   
pF1KE4 RKSGKYKKVEIKELGELRKEPSL
       :::::::::::::::::::::::
CCDS60 RKSGKYKKVEIKELGELRKEPSL
              310       320   

>>CCDS1833.1 EPCAM gene_id:4072|Hs108|chr2                (314 aa)
 initn: 923 init1: 416 opt: 1013  Z-score: 1173.8  bits: 225.4 E(32554): 4.6e-59
Smith-Waterman score: 1013; 49.7% identity (78.8% similar) in 316 aa overlap (7-320:1-311)

               10        20        30        40        50        60
pF1KE4 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS
             .::: . : . ::. ::..  .:::..:.: . :..:    . . .::: ..:.
CCDS18       MAPPQV-LAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGA
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KE4 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN
         .: :: :..:::..::.:.. : .:  ..: : :: .::::::::::  : :::.:::
CCDS18 QNTVICSKLAAKCLVMKAEMNGSKLGRR-AKP-EGALQNNDGLYDPDCDESGLFKAKQCN
            60        70        80          90       100       110 

              130       140       150       160       170       180
pF1KE4 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF
        ::.:::::..::::::: :  . :.: :::. :.:.:.:.     .. ..: . :.. .
CCDS18 GTSMCWCVNTAGVRRTDK-DTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEI
             120        130       140       150       160       170

              190       200       210       220       230       240
pF1KE4 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG
         ::.: :::.... ::. .: :.: ::.:::. .::::.:.:::::.:.::::::... 
CCDS18 TTRYQLDPKFITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKK
              180       190       200       210       220       230

              250         260       270       280       290        
pF1KE4 GLDLRVRGEPLQVE--RTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVIT
        .:: : :: :...  .:::::.::  :.:::. : ::.::::::::.:.:::..::::.
CCDS18 -MDLTVNGEQLDLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVIS
               240       250       260       270       280         

      300       310       320   
pF1KE4 NRRKSGKYKKVEIKELGELRKEPSL
        ... .::.:.::::.::...:   
CCDS18 RKKRMAKYEKAEIKEMGEMHRELNA
     290       300       310    




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:13:00 2016 done: Sat Nov  5 23:13:01 2016
 Total Scan time:  2.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]