Result of FASTA (omim) for
pFN21AE4313
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4313, 322 aa
1>>>pF1KE4313 322 - 322 aa - 322 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6856+/-0.000313; mu= 9.9299+/- 0.020
mean_var=86.6075+/-17.120, 0's: 0 Z-trim(117.7): 67 B-trim: 0 in 0/53
Lambda= 0.137815
statistics sampled from 29817 (29884) to 29817 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.35), width: 16
Scan time: 7.780
The best scores are: opt bits E(85289)
NP_006682 (OMIM: 605702) lymphatic vessel endothel ( 322) 2071 421.1 1.5e-117
NP_001189486 (OMIM: 107269,609027) CD44 antigen is ( 294) 270 63.0 8.6e-10
NP_001189485 (OMIM: 107269,609027) CD44 antigen is ( 340) 270 63.0 9.8e-10
NP_001001391 (OMIM: 107269,609027) CD44 antigen is ( 361) 270 63.1 1e-09
NP_001189484 (OMIM: 107269,609027) CD44 antigen is ( 429) 271 63.3 1.1e-09
XP_006718453 (OMIM: 107269,609027) PREDICTED: CD44 ( 397) 270 63.1 1.1e-09
XP_011518791 (OMIM: 107269,609027) PREDICTED: CD44 ( 402) 270 63.1 1.1e-09
XP_016874074 (OMIM: 107269,609027) PREDICTED: CD44 ( 403) 270 63.1 1.1e-09
XP_011518790 (OMIM: 107269,609027) PREDICTED: CD44 ( 425) 270 63.1 1.2e-09
XP_016874073 (OMIM: 107269,609027) PREDICTED: CD44 ( 446) 270 63.1 1.3e-09
XP_011518789 (OMIM: 107269,609027) PREDICTED: CD44 ( 446) 270 63.1 1.3e-09
NP_001001390 (OMIM: 107269,609027) CD44 antigen is ( 493) 270 63.1 1.4e-09
XP_005253297 (OMIM: 107269,609027) PREDICTED: CD44 ( 535) 270 63.1 1.5e-09
XP_011518788 (OMIM: 107269,609027) PREDICTED: CD44 ( 537) 270 63.1 1.5e-09
XP_005253296 (OMIM: 107269,609027) PREDICTED: CD44 ( 578) 270 63.1 1.6e-09
XP_005253295 (OMIM: 107269,609027) PREDICTED: CD44 ( 580) 270 63.1 1.6e-09
XP_011518787 (OMIM: 107269,609027) PREDICTED: CD44 ( 656) 270 63.1 1.8e-09
XP_011518786 (OMIM: 107269,609027) PREDICTED: CD44 ( 657) 270 63.1 1.8e-09
XP_011518785 (OMIM: 107269,609027) PREDICTED: CD44 ( 658) 270 63.1 1.8e-09
XP_011518784 (OMIM: 107269,609027) PREDICTED: CD44 ( 675) 270 63.1 1.8e-09
NP_001001389 (OMIM: 107269,609027) CD44 antigen is ( 699) 270 63.1 1.9e-09
XP_016874072 (OMIM: 107269,609027) PREDICTED: CD44 ( 699) 270 63.1 1.9e-09
XP_005253292 (OMIM: 107269,609027) PREDICTED: CD44 ( 700) 270 63.1 1.9e-09
XP_005253291 (OMIM: 107269,609027) PREDICTED: CD44 ( 702) 270 63.1 1.9e-09
XP_005253290 (OMIM: 107269,609027) PREDICTED: CD44 ( 703) 270 63.1 1.9e-09
XP_006718451 (OMIM: 107269,609027) PREDICTED: CD44 ( 741) 270 63.1 2e-09
XP_005253289 (OMIM: 107269,609027) PREDICTED: CD44 ( 742) 270 63.1 2e-09
NP_000601 (OMIM: 107269,609027) CD44 antigen isofo ( 742) 270 63.1 2e-09
XP_005253288 (OMIM: 107269,609027) PREDICTED: CD44 ( 743) 270 63.1 2e-09
NP_009046 (OMIM: 600410) tumor necrosis factor-ind ( 277) 196 48.3 2.2e-05
XP_016861492 (OMIM: 608560) PREDICTED: stabilin-1 (2555) 171 43.6 0.0053
XP_016861491 (OMIM: 608560) PREDICTED: stabilin-1 (2565) 171 43.6 0.0053
XP_005265031 (OMIM: 608560) PREDICTED: stabilin-1 (2569) 171 43.6 0.0053
NP_055951 (OMIM: 608560) stabilin-1 precursor [Hom (2570) 171 43.6 0.0053
XP_016861490 (OMIM: 608560) PREDICTED: stabilin-1 (2583) 171 43.6 0.0053
XP_016861489 (OMIM: 608560) PREDICTED: stabilin-1 (2589) 171 43.6 0.0054
XP_016861488 (OMIM: 608560) PREDICTED: stabilin-1 (2590) 171 43.6 0.0054
XP_005265030 (OMIM: 608560) PREDICTED: stabilin-1 (2595) 171 43.6 0.0054
XP_016861487 (OMIM: 608560) PREDICTED: stabilin-1 (2615) 171 43.6 0.0054
>>NP_006682 (OMIM: 605702) lymphatic vessel endothelial (322 aa)
initn: 2071 init1: 2071 opt: 2071 Z-score: 2231.4 bits: 421.1 E(85289): 1.5e-117
Smith-Waterman score: 2071; 99.7% identity (99.7% similar) in 322 aa overlap (1-322:1-322)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_006 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT
250 260 270 280 290 300
310 320
pF1KE4 DKNPEESKSPSKTTVRCLEAEV
::::::::::::::::::::::
NP_006 DKNPEESKSPSKTTVRCLEAEV
310 320
>>NP_001189486 (OMIM: 107269,609027) CD44 antigen isofor (294 aa)
initn: 210 init1: 150 opt: 270 Z-score: 296.8 bits: 63.0 E(85289): 8.6e-10
Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
NP_001 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
NP_001 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV
:. :: . .:.: . . .: . . : :.. .
NP_001 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTF
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE
NP_001 HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIA
230 240 250 260 270 280
>>NP_001189485 (OMIM: 107269,609027) CD44 antigen isofor (340 aa)
initn: 210 init1: 150 opt: 270 Z-score: 295.8 bits: 63.0 E(85289): 9.8e-10
Smith-Waterman score: 273; 25.3% identity (55.4% similar) in 316 aa overlap (25-312:17-321)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
NP_001 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
NP_001 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENK-----AAFKNEAA
:. :: . .:.: . . .: . . : :.. .. :. .....
NP_001 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRHSHGS
170 180 190 200 210 220
240 250 260 270
pF1KE4 GFGG------------VPTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIE
:: .: :..:: :. . : :. : . . .:.:...
NP_001 QEGGANTTSGPIRTPQIPEWLIILASLL-ALALILAVC-----IAVNSRRRCGQKKKLVI
230 240 250 260 270 280
280 290 300 310 320
pF1KE4 TK---VVKEEKANDSNPNEESKKTDK----NPEESKSPSKTTVRCLEAEV
.. .:...: . : .: ::. . : : :..:..
NP_001 NSGNGAVEDRKPSGLN-GEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIGV
290 300 310 320 330 340
>>NP_001001391 (OMIM: 107269,609027) CD44 antigen isofor (361 aa)
initn: 210 init1: 150 opt: 270 Z-score: 295.3 bits: 63.1 E(85289): 1e-09
Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
NP_001 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
NP_001 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV
:. :: . .:.: . . .: . . : :.. .
NP_001 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTF
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE
NP_001 HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIA
230 240 250 260 270 280
>>NP_001189484 (OMIM: 107269,609027) CD44 antigen isofor (429 aa)
initn: 210 init1: 150 opt: 271 Z-score: 295.2 bits: 63.3 E(85289): 1.1e-09
Smith-Waterman score: 271; 27.6% identity (58.5% similar) in 217 aa overlap (25-232:17-229)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
NP_001 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
NP_001 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENK-----AAFKNEAA
:. :: . .:.: . . .: . . : :.. .. :. .:...
NP_001 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATNRNDVT
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 GFGGVPTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDS
:
NP_001 GGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRS
230 240 250 260 270 280
>>XP_006718453 (OMIM: 107269,609027) PREDICTED: CD44 ant (397 aa)
initn: 233 init1: 150 opt: 270 Z-score: 294.6 bits: 63.1 E(85289): 1.1e-09
Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
XP_006 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
XP_006 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
XP_006 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV
:. :: . .:.: . . .: . . : :.. .
XP_006 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE
XP_006 ATATETATKRQETWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDR
230 240 250 260 270 280
>>XP_011518791 (OMIM: 107269,609027) PREDICTED: CD44 ant (402 aa)
initn: 231 init1: 150 opt: 270 Z-score: 294.6 bits: 63.1 E(85289): 1.1e-09
Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
XP_011 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
XP_011 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV
:. :: . .:.: . . .: . . : :.. .
XP_011 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATSTSSNT
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE
XP_011 ISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTKQNQDWTQWNPSH
230 240 250 260 270 280
>>XP_016874074 (OMIM: 107269,609027) PREDICTED: CD44 ant (403 aa)
initn: 210 init1: 150 opt: 270 Z-score: 294.5 bits: 63.1 E(85289): 1.1e-09
Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
XP_016 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
XP_016 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
XP_016 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV
:. :: . .:.: . . .: . . : :.. .
XP_016 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATSTSSNT
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE
XP_016 ISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTRDQDTFHPSGGSHTTHGSESDGHS
230 240 250 260 270 280
>>XP_011518790 (OMIM: 107269,609027) PREDICTED: CD44 ant (425 aa)
initn: 210 init1: 150 opt: 270 Z-score: 294.2 bits: 63.1 E(85289): 1.2e-09
Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
XP_011 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
XP_011 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV
:. :: . .:.: . . .: . . : :.. .
XP_011 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATNMDSSH
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE
XP_011 SITLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSRD
230 240 250 260 270 280
>>XP_016874073 (OMIM: 107269,609027) PREDICTED: CD44 ant (446 aa)
initn: 210 init1: 150 opt: 270 Z-score: 293.8 bits: 63.1 E(85289): 1.3e-09
Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214)
10 20 30 40 50 60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
: .......::. :. : :.. ... ::: .
XP_016 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
:. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : .
XP_016 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST
: :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: .
XP_016 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV
:. :: . .:.: . . .: . . : :.. .
XP_016 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE
XP_016 ATATETATKRQETWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDR
230 240 250 260 270 280
322 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:15:19 2016 done: Sat Nov 5 23:15:20 2016
Total Scan time: 7.780 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]