Result of FASTA (ccds) for
pFN21AE4312
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4312, 322 aa
1>>>pF1KE4312 322 - 322 aa - 322 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2577+/-0.000817; mu= 15.5621+/- 0.049
mean_var=57.3002+/-11.379, 0's: 0 Z-trim(105.8): 31 B-trim: 0 in 0/52
Lambda= 0.169432
statistics sampled from 8638 (8651) to 8638 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.266), width: 16
Scan time: 2.520
The best scores are: opt bits E(32554)
CCDS41338.1 SCP2 gene_id:6342|Hs108|chr1 ( 322) 2164 537.1 6.8e-153
CCDS53317.1 SCP2 gene_id:6342|Hs108|chr1 ( 503) 2131 529.2 2.7e-150
CCDS81325.1 SCP2 gene_id:6342|Hs108|chr1 ( 366) 1722 429.1 2.5e-120
CCDS53319.1 SCP2 gene_id:6342|Hs108|chr1 ( 466) 1689 421.1 8.4e-118
CCDS53318.1 SCP2 gene_id:6342|Hs108|chr1 ( 523) 1689 421.1 9.3e-118
CCDS572.1 SCP2 gene_id:6342|Hs108|chr1 ( 547) 1689 421.1 9.7e-118
>>CCDS41338.1 SCP2 gene_id:6342|Hs108|chr1 (322 aa)
initn: 2164 init1: 2164 opt: 2164 Z-score: 2858.4 bits: 537.1 E(32554): 6.8e-153
Smith-Waterman score: 2164; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)
10 20 30 40 50 60
pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 YAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 CPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 ARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVI
250 260 270 280 290 300
310 320
pF1KE4 NPSGGLISKGHPLGATGGHSCS
::::::::::::::::::::::
CCDS41 NPSGGLISKGHPLGATGGHSCS
310 320
>>CCDS53317.1 SCP2 gene_id:6342|Hs108|chr1 (503 aa)
initn: 2123 init1: 2123 opt: 2131 Z-score: 2811.7 bits: 529.2 E(32554): 2.7e-150
Smith-Waterman score: 2131; 98.8% identity (99.4% similar) in 322 aa overlap (1-322:1-322)
10 20 30 40 50 60
pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 YAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 CPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 ARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVI
250 260 270 280 290 300
310 320
pF1KE4 NPSGGLISKGHPLGATGGHSCS
::::::::::::::::: .:.
CCDS53 NPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYK
310 320 330 340 350 360
>>CCDS81325.1 SCP2 gene_id:6342|Hs108|chr1 (366 aa)
initn: 1722 init1: 1722 opt: 1722 Z-score: 2273.6 bits: 429.1 E(32554): 2.5e-120
Smith-Waterman score: 1981; 87.6% identity (87.6% similar) in 354 aa overlap (13-322:13-366)
10 20 30 40 50 60
pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA
10 20 30 40 50 60
70
pF1KE4 CVGYVFG--------------------------------------------VAECVLALG
::::::: :::::::::
CCDS81 CVGYVFGDSTCGQRAIYHSLGMTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALG
70 80 90 100 110 120
80 90 100 110 120 130
pF1KE4 FEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEH
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE4 FAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEA
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE4 FVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDID
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE4 VIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGAT
310 320 330 340 350 360
320
pF1KE4 GGHSCS
::::::
CCDS81 GGHSCS
>>CCDS53319.1 SCP2 gene_id:6342|Hs108|chr1 (466 aa)
initn: 1681 init1: 1681 opt: 1689 Z-score: 2228.4 bits: 421.1 E(32554): 8.4e-118
Smith-Waterman score: 1689; 98.4% identity (99.2% similar) in 256 aa overlap (67-322:30-285)
40 50 60 70 80 90
pF1KE4 DLAEEAGKKALADAQIPYSAVDQACVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPT
::::::::::::::::::::::::::::::
CCDS53 MTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALGFEKMSKGSLGIKFSDRTIPT
10 20 30 40 50
100 110 120 130 140 150
pF1KE4 DKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQF
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE4 QDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMM
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE4 TDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALG
180 190 200 210 220 230
280 290 300 310 320
pF1KE4 LCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATGGHSCS
::::::::::::::::::::::::::::::::::::::::: .:.
CCDS53 LCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQ
240 250 260 270 280 290
CCDS53 VPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEI
300 310 320 330 340 350
>>CCDS53318.1 SCP2 gene_id:6342|Hs108|chr1 (523 aa)
initn: 1960 init1: 1681 opt: 1689 Z-score: 2227.6 bits: 421.1 E(32554): 9.3e-118
Smith-Waterman score: 1942; 88.0% identity (90.9% similar) in 342 aa overlap (1-322:1-342)
10 20 30 40 50
pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKK---------ALADAQ
::::::::::::::::::::::::::::::::::::::::::: . .:. .
CCDS53 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGDSTCGQRAIYHSLGMTG
10 20 30 40 50 60
60 70 80 90 100
pF1KE4 IPYSAVDQACVG---YVF--------GVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHV
:: :.. :. .: ::::::::::::::::::::::::::::::::::
CCDS53 IPIINVNNNCATGSTALFMARQLIQGGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 DLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEY
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE4 SLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE4 SSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPE
250 260 270 280 290 300
290 300 310 320
pF1KE4 GQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATGGHSCS
::::::::::::::::::::::::::::::::::::: .:.
CCDS53 GQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGA
310 320 330 340 350 360
CCDS53 KVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKL
370 380 390 400 410 420
>>CCDS572.1 SCP2 gene_id:6342|Hs108|chr1 (547 aa)
initn: 1681 init1: 1681 opt: 1689 Z-score: 2227.3 bits: 421.1 E(32554): 9.7e-118
Smith-Waterman score: 1948; 86.4% identity (87.0% similar) in 354 aa overlap (13-322:13-366)
10 20 30 40 50 60
pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA
10 20 30 40 50 60
70
pF1KE4 CVGYVFG--------------------------------------------VAECVLALG
::::::: :::::::::
CCDS57 CVGYVFGDSTCGQRAIYHSLGMTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALG
70 80 90 100 110 120
80 90 100 110 120 130
pF1KE4 FEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 FEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEH
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE4 FAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 FAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEA
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE4 FVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 FVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDID
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE4 VIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGAT
310 320 330 340 350 360
320
pF1KE4 GGHSCS
: .:.
CCDS57 GLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIE
370 380 390 400 410 420
322 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:25:14 2016 done: Sat Nov 5 23:25:14 2016
Total Scan time: 2.520 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]