FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4311, 322 aa
  1>>>pF1KE4311 322 - 322 aa - 322 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8157+/-0.000371; mu= 18.7654+/- 0.023
 mean_var=61.5138+/-12.083, 0's: 0 Z-trim(113.1): 16  B-trim: 33 in 1/52
 Lambda= 0.163526
 statistics sampled from 22274 (22284) to 22274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.261), width:  16
 Scan time:  6.660

The best scores are:                                      opt bits E(85289)
NP_001873 (OMIM: 122559) corticotropin-releasing f ( 322) 2214 530.8 1.5e-150


>>NP_001873 (OMIM: 122559) corticotropin-releasing facto  (322 aa)
 initn: 2214 init1: 2214 opt: 2214  Z-score: 2824.0  bits: 530.8 E(85289): 1.5e-150
Smith-Waterman score: 2214; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KE4 MSPNFKLQCHFILIFLTALRGESRYLELREAADYDPFLLFSANLKRELAGEQPYRRALRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPNFKLQCHFILIFLTALRGESRYLELREAADYDPFLLFSANLKRELAGEQPYRRALRC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LDMLSLQGQFTFTADRPQLHCAAFFISEPEEFITIHYDQVSIDCQGGDFLKVFDGWILKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDMLSLQGQFTFTADRPQLHCAAFFISEPEEFITIHYDQVSIDCQGGDFLKVFDGWILKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 EKFPSSQDHPLPSAERYIDFCESGLSRRSIRSSQNVAMIFFRVHEPGNGFTLTIKTDPNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKFPSSQDHPLPSAERYIDFCESGLSRRSIRSSQNVAMIFFRVHEPGNGFTLTIKTDPNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 FPCNVISQTPNGKFTLVVPHQHRNCSFSIIYPVVIKISDLTLGHVNGLQLKKSSAGCEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPCNVISQTPNGKFTLVVPHQHRNCSFSIIYPVVIKISDLTLGHVNGLQLKKSSAGCEGI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 GDFVELLGGTGLDPSKMTPLADLCYPFHGPAQMKVGCDNTVVRMVSSGKHVNRVTFEYRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDFVELLGGTGLDPSKMTPLADLCYPFHGPAQMKVGCDNTVVRMVSSGKHVNRVTFEYRQ
              250       260       270       280       290       300

              310       320  
pF1KE4 LEPYELENPNGNSIGEFCLSGL
       ::::::::::::::::::::::
NP_001 LEPYELENPNGNSIGEFCLSGL
              310       320  




322 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:25:50 2016 done: Sat Nov  5 23:25:51 2016
 Total Scan time:  6.660 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]