Result of FASTA (omim) for
pFN21AE4305
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4305, 305 aa
1>>>pF1KE4305 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0109+/-0.000372; mu= 17.0033+/- 0.023
mean_var=61.9463+/-12.596, 0's: 0 Z-trim(113.1): 48 B-trim: 0 in 0/51
Lambda= 0.162955
statistics sampled from 22216 (22264) to 22216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.261), width: 16
Scan time: 6.710
The best scores are: opt bits E(85289)
NP_006571 (OMIM: 248250,603959) claudin-16 [Homo s ( 305) 2111 504.8 8.6e-143
NP_001298 (OMIM: 609131) claudin-7 isoform 1 precu ( 211) 292 77.1 3.4e-14
NP_001171951 (OMIM: 609131) claudin-7 isoform 1 pr ( 211) 292 77.1 3.4e-14
NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sa ( 211) 280 74.3 2.4e-13
NP_001172009 (OMIM: 615778) claudin-15 [Homo sapie ( 228) 259 69.4 7.9e-12
NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens] ( 228) 259 69.4 7.9e-12
NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens] ( 209) 232 63.0 6e-10
NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens] ( 217) 230 62.5 8.5e-10
NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens] ( 225) 229 62.3 1e-09
NP_057453 (OMIM: 609210) claudin-18 isoform 1 prec ( 261) 226 61.6 1.9e-09
NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens] ( 220) 225 61.3 1.9e-09
NP_683763 (OMIM: 248190,610036) claudin-19 isoform ( 224) 225 61.4 2e-09
NP_001116867 (OMIM: 248190,610036) claudin-19 isof ( 211) 224 61.1 2.2e-09
NP_067018 (OMIM: 615798) claudin-6 precursor [Homo ( 220) 221 60.4 3.7e-09
NP_652763 (OMIM: 605608,614035) claudin-14 [Homo s ( 239) 216 59.3 9e-09
NP_001139551 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 216 59.3 9e-09
NP_001139550 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 216 59.3 9e-09
NP_001139549 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 216 59.3 9e-09
NP_036262 (OMIM: 605608,614035) claudin-14 [Homo s ( 239) 216 59.3 9e-09
NP_001164563 (OMIM: 300520) claudin-2 [Homo sapien ( 230) 210 57.8 2.3e-08
NP_001164566 (OMIM: 300520) claudin-2 [Homo sapien ( 230) 210 57.8 2.3e-08
NP_065117 (OMIM: 300520) claudin-2 [Homo sapiens] ( 230) 210 57.8 2.3e-08
NP_001002026 (OMIM: 609210) claudin-18 isoform 2 [ ( 261) 207 57.2 4.2e-08
NP_001171952 (OMIM: 609131) claudin-7 isoform 2 pr ( 145) 195 54.2 1.8e-07
NP_036263 (OMIM: 617005) claudin-17 [Homo sapiens] ( 224) 167 47.7 2.5e-05
NP_001172002 (OMIM: 611232) claudin-12 [Homo sapie ( 244) 165 47.3 3.7e-05
NP_036261 (OMIM: 611232) claudin-12 [Homo sapiens] ( 244) 165 47.3 3.7e-05
NP_001172001 (OMIM: 611232) claudin-12 [Homo sapie ( 244) 165 47.3 3.7e-05
NP_001172046 (OMIM: 248190,610036) claudin-19 isof ( 218) 164 47.0 4e-05
NP_919260 (OMIM: 609203) claudin-23 [Homo sapiens] ( 292) 141 41.7 0.0022
>>NP_006571 (OMIM: 248250,603959) claudin-16 [Homo sapie (305 aa)
initn: 2111 init1: 2111 opt: 2111 Z-score: 2684.6 bits: 504.8 E(85289): 8.6e-143
Smith-Waterman score: 2111; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KE4 MTSRTPLLVTACLYYSYCNSRHLQQGVRKSKRPVFSHCQVPETQKTDTRHLSGARAGVCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTSRTPLLVTACLYYSYCNSRHLQQGVRKSKRPVFSHCQVPETQKTDTRHLSGARAGVCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNADDSLEVSTKCRGLWWEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 CCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNADDSLEVSTKCRGLWWEC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 VTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 YIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYKFGWSCWLGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYKFGWSCWLGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 AGSLGCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AGSLGCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYA
250 260 270 280 290 300
pF1KE4 VDTRV
:::::
NP_006 VDTRV
>>NP_001298 (OMIM: 609131) claudin-7 isoform 1 precursor (211 aa)
initn: 280 init1: 126 opt: 292 Z-score: 375.8 bits: 77.1 E(85289): 3.4e-14
Smith-Waterman score: 292; 28.8% identity (62.9% similar) in 205 aa overlap (75-272:6-204)
50 60 70 80 90 100
pF1KE4 KTDTRHLSGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA-
:: .. .:... :.. : :....
NP_001 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSY
10 20 30
110 120 130 140 150 160
pF1KE4 --DDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGF
:. . ... .::: .:::.. :. .: :::.:: : .:::::... .:. .
NP_001 AGDNIITAQAMYKGLWMDCVTQS-TGMMSCKMYDSVLALSA-ALQATRALMVVSLVLGFL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 GFLTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVE-RSTLV
.... .:. :.. :. :.:: . .: ...:: .... ::. .. .. . :.
NP_001 AMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWYGHQIVTDFYNPLI
100 110 120 130 140 150
230 240 250 260 270
pF1KE4 LHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTC-CLYLFKDVGPE--RNYPYSLRKAY
:: .:.:: . ..: ::: .:.::.:.: : . .: . :.:: :
NP_001 PTNI----KYEFGPAIFIGWAGSALVILGGALLSCSCPGNESKAGYRVPRSYPKSNSSKE
160 170 180 190 200
280 290 300
pF1KE4 SAAGVSMAKSYSAPRTETAKMYAVDTRV
NP_001 YV
210
>>NP_001171951 (OMIM: 609131) claudin-7 isoform 1 precur (211 aa)
initn: 280 init1: 126 opt: 292 Z-score: 375.8 bits: 77.1 E(85289): 3.4e-14
Smith-Waterman score: 292; 28.8% identity (62.9% similar) in 205 aa overlap (75-272:6-204)
50 60 70 80 90 100
pF1KE4 KTDTRHLSGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA-
:: .. .:... :.. : :....
NP_001 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSY
10 20 30
110 120 130 140 150 160
pF1KE4 --DDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGF
:. . ... .::: .:::.. :. .: :::.:: : .:::::... .:. .
NP_001 AGDNIITAQAMYKGLWMDCVTQS-TGMMSCKMYDSVLALSA-ALQATRALMVVSLVLGFL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 GFLTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVE-RSTLV
.... .:. :.. :. :.:: . .: ...:: .... ::. .. .. . :.
NP_001 AMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWYGHQIVTDFYNPLI
100 110 120 130 140 150
230 240 250 260 270
pF1KE4 LHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTC-CLYLFKDVGPE--RNYPYSLRKAY
:: .:.:: . ..: ::: .:.::.:.: : . .: . :.:: :
NP_001 PTNI----KYEFGPAIFIGWAGSALVILGGALLSCSCPGNESKAGYRVPRSYPKSNSSKE
160 170 180 190 200
280 290 300
pF1KE4 SAAGVSMAKSYSAPRTETAKMYAVDTRV
NP_001 YV
210
>>NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sapien (211 aa)
initn: 208 init1: 146 opt: 280 Z-score: 360.5 bits: 74.3 E(85289): 2.4e-13
Smith-Waterman score: 281; 27.4% identity (58.4% similar) in 219 aa overlap (74-288:8-210)
50 60 70 80 90 100
pF1KE4 QKTDTRHLSGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA
:: .: :.....: ::.: : . .
NP_066 MANAGLQLLGFILAFLGWIGA---IVSTALPQWRIYS
10 20 30
110 120 130 140 150 160
pF1KE4 ---DDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAG
:. . ... .::: ::... :. : .::.: : .:::::... .:.
NP_066 YAGDNIVTAQAMYEGLWMSCVSQSTGQIQ-CKVFDSLLNLSST-LQATRALMVVGILLGV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 FGFLTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLV
..... .:. :.: : :. :.:. ..:: .:.:: .....::. . : .
NP_066 IAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYDPM
100 110 120 130 140 150
230 240 250 260 270
pF1KE4 LHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTC-CLYLFKDVGPERNYPYSLRKAYSA
.. .:.:: . . : :.. :.:.::.: : : :... : . :
NP_066 TP---VNARYEFGQALFTGWAAASLCLLGGALLCCSC--------PRKTTSYPTPRPYPK
160 170 180 190 200
280 290 300
pF1KE4 AGVSMAKSYSAPRTETAKMYAVDTRV
. : .:.:
NP_066 PAPSSGKDYV
210
>>NP_001172009 (OMIM: 615778) claudin-15 [Homo sapiens] (228 aa)
initn: 171 init1: 133 opt: 259 Z-score: 333.4 bits: 69.4 E(85289): 7.9e-12
Smith-Waterman score: 259; 30.9% identity (59.9% similar) in 207 aa overlap (82-279:8-201)
60 70 80 90 100
pF1KE4 SGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSA--GFLI--VATWTDCWMVNA--DD
:.:: : :.:. :. .. : :.. .
NP_001 MSMAVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGN
10 20 30
110 120 130 140 150 160
pF1KE4 SLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGF-GFL
. ..: ..::. :.:... :. .: :. :.:: . . ::::::: :: :: :.:
NP_001 VITTNTIFENLWFSCATDSL-GVYNCWEFPSMLALSGY-IQACRALMITA-ILLGFLGLL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 TLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNI
. :: :... : :... .::: ..:: :... ::: .. . . .
NP_001 LGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAISWYAFNI----TRDFFDPL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE4 FLGIQYKFGWSCWLGMAGSLGCFLAGAVL--TCCLYLFKDVGPERNYPYSLRKAYSAAGV
. : .:..: . .:: ..:: .:.: : .:: : ... : :. :.:
NP_001 YPGTKYELGPALYLGWSASLISILGGLCLCSACC------CGSDEDPAASARRPYQAPVS
160 170 180 190 200
290 300
pF1KE4 SMAKSYSAPRTETAKMYAVDTRV
NP_001 VMPVATSDQEGDSSFGKYGRNAYV
210 220
>>NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens] (228 aa)
initn: 171 init1: 133 opt: 259 Z-score: 333.4 bits: 69.4 E(85289): 7.9e-12
Smith-Waterman score: 259; 30.9% identity (59.9% similar) in 207 aa overlap (82-279:8-201)
60 70 80 90 100
pF1KE4 SGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSA--GFLI--VATWTDCWMVNA--DD
:.:: : :.:. :. .. : :.. .
NP_055 MSMAVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGN
10 20 30
110 120 130 140 150 160
pF1KE4 SLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGF-GFL
. ..: ..::. :.:... :. .: :. :.:: . . ::::::: :: :: :.:
NP_055 VITTNTIFENLWFSCATDSL-GVYNCWEFPSMLALSGY-IQACRALMITA-ILLGFLGLL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 TLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNI
. :: :... : :... .::: ..:: :... ::: .. . . .
NP_055 LGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAISWYAFNI----TRDFFDPL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE4 FLGIQYKFGWSCWLGMAGSLGCFLAGAVL--TCCLYLFKDVGPERNYPYSLRKAYSAAGV
. : .:..: . .:: ..:: .:.: : .:: : ... : :. :.:
NP_055 YPGTKYELGPALYLGWSASLISILGGLCLCSACC------CGSDEDPAASARRPYQAPVS
160 170 180 190 200
290 300
pF1KE4 SMAKSYSAPRTETAKMYAVDTRV
NP_055 VMPVATSDQEGDSSFGKYGRNAYV
210 220
>>NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens] (209 aa)
initn: 135 init1: 46 opt: 232 Z-score: 299.6 bits: 63.0 E(85289): 6e-10
Smith-Waterman score: 262; 32.6% identity (59.6% similar) in 193 aa overlap (99-288:30-208)
70 80 90 100 110 120
pF1KE4 ATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA---DDSLEVSTKCRGLWWECVTNAF
: :.: .. . .: .::: .::...
NP_001 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQS-
10 20 30 40 50
130 140 150 160 170 180
pF1KE4 DGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEPYIKVR
: : :::.:: : : ..:::.: . :.:..: : ..: :.. : :: :..
NP_001 TGQMQCKVYDSLLAL-PQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDES-AKAK
60 70 80 90 100 110
190 200 210 220 230 240
pF1KE4 ICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYKFGWSCWLGMAGSLG
.:::...:.:: :. : : .. . . .. . : . ..: : ..: :.: :
NP_001 TMIVAGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVAS---GQKREMGASLYVGWAAS-G
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE4 CFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYAVDTRV
.: :. : :: . :. . ::: . :::: . :..:
NP_001 LLLLGGGLLCC-----NCPPRTDKPYSAK--YSAARSAAASNYV
180 190 200
>>NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens] (217 aa)
initn: 211 init1: 80 opt: 230 Z-score: 296.8 bits: 62.5 E(85289): 8.5e-10
Smith-Waterman score: 231; 32.5% identity (57.1% similar) in 191 aa overlap (99-285:30-208)
70 80 90 100 110 120
pF1KE4 ATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA--DDSLEVSTKC-RGLWWECVTNAF
: :.: .:. :. .::: ::...
NP_066 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQS-
10 20 30 40 50
130 140 150 160 170 180
pF1KE4 DGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEPYIKVR
: : :::.:: : : ..::: . : .:: .:.:. . : .:. . :: :.:
NP_066 TGQMQCKVYDSLLAL-PQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEG-AKAR
60 70 80 90 100 110
190 200 210 220 230 240
pF1KE4 ICFVAGATLLIAGTPGIIGSVWYAVDVYVE-RSTLVLHNIFLGIQYKFGWSCWLGMAGSL
: ..::. ::.:: .: : : . . . :: . ... ..: : .:: :..
NP_066 IVLTAGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAE----ALKRELGASLYLGWAAAA
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE4 GCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYAVDTR
.:.:..: :: :. . : . : .:: . : :
NP_066 LLMLGGGLL-CCTC----PPPQVERPRGPRLGYSIPSRSGASGLDKRDYV
180 190 200 210
pF1KE4 V
>>NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens] (225 aa)
initn: 123 init1: 49 opt: 229 Z-score: 295.3 bits: 62.3 E(85289): 1e-09
Smith-Waterman score: 229; 27.5% identity (60.8% similar) in 189 aa overlap (91-273:22-199)
70 80 90 100 110
pF1KE4 CCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA--DDSLEVSTKC-RGLW
...: : :.: .... : . .:::
NP_955 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLW
10 20 30 40 50
120 130 140 150 160 170
pF1KE4 WECVTNAFDGIRT-CDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFL
.:: .: .:: : :::.:: : : ..:.:: .:.... ..:. .::. :..
NP_955 MNCVRQA--NIRMQCKIYDSLLALSP-DLQAARGLMCAASVMSFLAFMMAILGMKCTRCT
60 70 80 90 100
180 190 200 210 220 230
pF1KE4 PDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYK--FGW
:. .:..: ..:: ..:.: .: : : . . ..: .... : .:
NP_955 GDNEKVKAHILLTAGIIFIITGMVVLIPVSWVANAIIRD-----FYNSIVNVAQKRELGE
110 120 130 140 150 160
240 250 260 270 280 290
pF1KE4 SCWLGMAGSLGCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTE
. .:: . .: ...:..: ::.. .. .: ::.
NP_955 ALYLGWTTAL-VLIVGGALFCCVFCCNE--KSSSYRYSIPSHRTTQKSYHTGKKSPSVYS
170 180 190 200 210 220
300
pF1KE4 TAKMYAVDTRV
NP_955 RSQYV
>>NP_057453 (OMIM: 609210) claudin-18 isoform 1 precurso (261 aa)
initn: 120 init1: 72 opt: 226 Z-score: 290.6 bits: 61.6 E(85289): 1.9e-09
Smith-Waterman score: 227; 26.9% identity (57.4% similar) in 223 aa overlap (76-285:7-219)
50 60 70 80 90 100
pF1KE4 TDTRHLSGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA--
: .: ...... . :.:: : : ..
NP_057 MSTTTCQVVAFLLSILGLAGCIAATGMDMWSTQDLY
10 20 30
110 120 130 140 150 160
pF1KE4 DDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGF
:. . . .::: :: .. .:. : : .::. : : ..:::::.. .:...:.
NP_057 DNPVTSVFQYEGLWRSCVRQS-SGFTECRPYFTILGL-PAMLQAVRALMIVGIVLGAIGL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE4 LTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHN
:. ...: :... : :. . ...: ....: .: : .: .. : . :
NP_057 LVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIAGVSVFA-NMLVTNFWMSTAN
100 110 120 130 140 150
230 240 250 260 270
pF1KE4 IFLGI---------QYKFGWSCWLG-MAGSLGCFLAGAVLTCCLYLFKDVGPER-NYPYS
.. :. .: :: . ..: .:: : : :.:. : . ..::. ::
NP_057 MYTGMGGMVQTVQTRYTFGAALFVGWVAG--GLTLIGGVMMC--IACRGLAPEETNYKAV
160 170 180 190 200
280 290 300
pF1KE4 LRKAYSAAGVSMAKSYSAPRTETAKMYAVDTRV
.: :.: :.:
NP_057 ---SYHASGHSVAYKPGGFKASTGFGSNTKNKKIYDGGARTEDEVQSYPSKHDYV
210 220 230 240 250 260
305 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:28:38 2016 done: Sat Nov 5 23:28:39 2016
Total Scan time: 6.710 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]