Result of FASTA (omim) for
pFN21AE4304
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4304, 301 aa
1>>>pF1KE4304 301 - 301 aa - 301 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3652+/-0.000361; mu= 15.4826+/- 0.022
mean_var=87.7397+/-17.636, 0's: 0 Z-trim(114.6): 114 B-trim: 0 in 0/57
Lambda= 0.136923
statistics sampled from 24377 (24505) to 24377 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.287), width: 16
Scan time: 7.510
The best scores are: opt bits E(85289)
NP_116171 (OMIM: 606652) hepatitis A virus cellula ( 301) 2020 409.0 5.8e-114
XP_016864829 (OMIM: 147050,606518) PREDICTED: hepa ( 352) 344 78.0 3e-14
NP_001166864 (OMIM: 147050,606518) hepatitis A vir ( 364) 344 78.0 3.1e-14
NP_036338 (OMIM: 147050,606518) hepatitis A virus ( 364) 344 78.0 3.1e-14
XP_016864828 (OMIM: 147050,606518) PREDICTED: hepa ( 400) 344 78.1 3.3e-14
NP_001295085 (OMIM: 147050,606518) hepatitis A vir ( 401) 344 78.1 3.3e-14
XP_011532996 (OMIM: 610096) PREDICTED: T-cell immu ( 299) 333 75.8 1.2e-13
XP_016865510 (OMIM: 610096) PREDICTED: T-cell immu ( 323) 333 75.8 1.3e-13
NP_001140198 (OMIM: 610096) T-cell immunoglobulin ( 350) 333 75.8 1.3e-13
NP_612388 (OMIM: 610096) T-cell immunoglobulin and ( 378) 333 75.9 1.4e-13
NP_001186438 (OMIM: 604531) natural cytotoxicity t ( 270) 170 43.5 0.00054
NP_001193993 (OMIM: 602621) coxsackievirus and ade ( 200) 166 42.6 0.00076
NP_001186439 (OMIM: 604531) natural cytotoxicity t ( 258) 164 42.3 0.0012
XP_016866989 (OMIM: 604531) PREDICTED: natural cyt ( 274) 164 42.4 0.0013
NP_004819 (OMIM: 604531) natural cytotoxicity trig ( 276) 164 42.4 0.0013
XP_011527781 (OMIM: 602621) PREDICTED: coxsackievi ( 252) 159 41.3 0.0023
NP_001193992 (OMIM: 602621) coxsackievirus and ade ( 252) 159 41.3 0.0023
XP_011527780 (OMIM: 602621) PREDICTED: coxsackievi ( 258) 159 41.3 0.0024
XP_011527779 (OMIM: 602621) PREDICTED: coxsackievi ( 278) 159 41.4 0.0025
>>NP_116171 (OMIM: 606652) hepatitis A virus cellular re (301 aa)
initn: 2020 init1: 2020 opt: 2020 Z-score: 2167.0 bits: 409.0 E(85289): 5.8e-114
Smith-Waterman score: 2020; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KE4 MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGACPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGACPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 FECGNVVLRTDERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGIMND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 FECGNVVLRTDERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGIMND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EKFNLKLVIKPAKVTPAPTLQRDFTAAFPRMLTTRGHGPAETQTLGSLPDINLTQISTLA
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_116 EKFNLKLVIKPAKVTPAPTRQRDFTAAFPRMLTTRGHGPAETQTLGSLPDINLTQISTLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 NELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHSKEKIQNLSLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 NELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHSKEKIQNLSLI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 SLANLPPSGLANAVAEGIRSEENIYTIEENVYEVEEPNEYYCYVSSRQQPSQPLGCRFAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 SLANLPPSGLANAVAEGIRSEENIYTIEENVYEVEEPNEYYCYVSSRQQPSQPLGCRFAM
250 260 270 280 290 300
pF1KE4 P
:
NP_116 P
>>XP_016864829 (OMIM: 147050,606518) PREDICTED: hepatiti (352 aa)
initn: 340 init1: 210 opt: 344 Z-score: 376.9 bits: 78.0 E(85289): 3e-14
Smith-Waterman score: 344; 36.0% identity (62.8% similar) in 172 aa overlap (10-178:6-168)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRS--SEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
:.: :.: :. : . :. .:.: .. ::: :. : .. .::..:.:
XP_016 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYS----GAVTSMCWNRGSC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTDERDVNYWT-SRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
.: : : .. :. :.: .:: : ::. . ::::::::....:::.::::.. :
XP_016 SLFTCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTPAPTLQRDFTAAFPRMLTTRGHGPAETQTLGSLPDINLTQIS
.:: :....: : : ::: .: . .. : . :.: . : : . . : .
XP_016 FNDMKITVSLEIVPPKVTTTPIV-----TTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVP
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 TLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHSKEKIQNL
:
XP_016 TTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVAT
170 180 190 200 210 220
>>NP_001166864 (OMIM: 147050,606518) hepatitis A virus c (364 aa)
initn: 364 init1: 210 opt: 344 Z-score: 376.7 bits: 78.0 E(85289): 3.1e-14
Smith-Waterman score: 344; 36.0% identity (62.8% similar) in 172 aa overlap (10-178:6-168)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRS--SEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
:.: :.: :. : . :. .:.: .. ::: :. : .. .::..:.:
NP_001 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYS----GAVTSMCWNRGSC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTDERDVNYWT-SRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
.: : : .. :. :.: .:: : ::. . ::::::::....:::.::::.. :
NP_001 SLFTCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTPAPTLQRDFTAAFPRMLTTRGHGPAETQTLGSLPDINLTQIS
.:: :....: : : ::: .: . .. : . :.: . : : . . : .
NP_001 FNDMKITVSLEIVPPKVTTTPIV-----TTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVP
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 TLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHSKEKIQNL
:
NP_001 TTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVAT
170 180 190 200 210 220
>>NP_036338 (OMIM: 147050,606518) hepatitis A virus cell (364 aa)
initn: 364 init1: 210 opt: 344 Z-score: 376.7 bits: 78.0 E(85289): 3.1e-14
Smith-Waterman score: 344; 36.0% identity (62.8% similar) in 172 aa overlap (10-178:6-168)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRS--SEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
:.: :.: :. : . :. .:.: .. ::: :. : .. .::..:.:
NP_036 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYS----GAVTSMCWNRGSC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTDERDVNYWT-SRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
.: : : .. :. :.: .:: : ::. . ::::::::....:::.::::.. :
NP_036 SLFTCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTPAPTLQRDFTAAFPRMLTTRGHGPAETQTLGSLPDINLTQIS
.:: :....: : : ::: .: . .. : . :.: . : : . . : .
NP_036 FNDMKITVSLEIVPPKVTTTPIV-----TTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVP
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 TLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHSKEKIQNL
:
NP_036 TTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVAT
170 180 190 200 210 220
>>XP_016864828 (OMIM: 147050,606518) PREDICTED: hepatiti (400 aa)
initn: 340 init1: 210 opt: 344 Z-score: 376.1 bits: 78.1 E(85289): 3.3e-14
Smith-Waterman score: 344; 36.0% identity (62.8% similar) in 172 aa overlap (10-178:6-168)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRS--SEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
:.: :.: :. : . :. .:.: .. ::: :. : .. .::..:.:
XP_016 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYS----GAVTSMCWNRGSC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTDERDVNYWT-SRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
.: : : .. :. :.: .:: : ::. . ::::::::....:::.::::.. :
XP_016 SLFTCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTPAPTLQRDFTAAFPRMLTTRGHGPAETQTLGSLPDINLTQIS
.:: :....: : : ::: .: . .. : . :.: . : : . . : .
XP_016 FNDMKITVSLEIVPPKVTTTPIV-----TTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVP
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 TLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHSKEKIQNL
:
XP_016 TTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPATS
170 180 190 200 210 220
>>NP_001295085 (OMIM: 147050,606518) hepatitis A virus c (401 aa)
initn: 340 init1: 210 opt: 344 Z-score: 376.1 bits: 78.1 E(85289): 3.3e-14
Smith-Waterman score: 344; 36.0% identity (62.8% similar) in 172 aa overlap (10-178:6-168)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRS--SEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
:.: :.: :. : . :. .:.: .. ::: :. : .. .::..:.:
NP_001 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYS----GAVTSMCWNRGSC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTDERDVNYWT-SRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
.: : : .. :. :.: .:: : ::. . ::::::::....:::.::::.. :
NP_001 SLFTCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTPAPTLQRDFTAAFPRMLTTRGHGPAETQTLGSLPDINLTQIS
.:: :....: : : ::: .: . .. : . :.: . : : . . : .
NP_001 FNDMKITVSLEIVPPKVTTTPIV-----TTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVP
120 130 140 150 160
180 190 200 210 220 230
pF1KE4 TLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHSKEKIQNL
:
NP_001 TTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVAT
170 180 190 200 210 220
>>XP_011532996 (OMIM: 610096) PREDICTED: T-cell immunogl (299 aa)
initn: 276 init1: 199 opt: 333 Z-score: 366.0 bits: 75.8 E(85289): 1.2e-13
Smith-Waterman score: 333; 35.6% identity (60.3% similar) in 174 aa overlap (15-180:17-189)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
: : .::. .:. . :::.:. . : .:::: :
XP_011 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSH-NSNSMCWGKDQC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTD-ERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
: : ....::: : .. ...: :.: . .::::::: : . .:::.:::::..::
XP_011 PYSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTP---APTLQRDFTAAFPRMLTTRGHGPAETQT-LGSLPDINL
.:: :.:..: .. :..: : : : :.. : :: : . . ::..
XP_011 FNDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 ---TQISTLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHS
:..:.:
XP_011 GTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSS
180 190 200 210 220 230
>>XP_016865510 (OMIM: 610096) PREDICTED: T-cell immunogl (323 aa)
initn: 276 init1: 199 opt: 333 Z-score: 365.6 bits: 75.8 E(85289): 1.3e-13
Smith-Waterman score: 333; 35.6% identity (60.3% similar) in 174 aa overlap (15-180:17-189)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
: : .::. .:. . :::.:. . : .:::: :
XP_016 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSH-NSNSMCWGKDQC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTD-ERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
: : ....::: : .. ...: :.: . .::::::: : . .:::.:::::..::
XP_016 PYSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTP---APTLQRDFTAAFPRMLTTRGHGPAETQT-LGSLPDINL
.:: :.:..: .. :..: : : : :.. : :: : . . ::..
XP_016 FNDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 ---TQISTLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHS
:..:.:
XP_016 GTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAASDTAVPEQNKTT
180 190 200 210 220 230
>>NP_001140198 (OMIM: 610096) T-cell immunoglobulin and (350 aa)
initn: 276 init1: 199 opt: 333 Z-score: 365.1 bits: 75.8 E(85289): 1.3e-13
Smith-Waterman score: 333; 35.6% identity (60.3% similar) in 174 aa overlap (15-180:17-189)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
: : .::. .:. . :::.:. . : .:::: :
NP_001 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSH-NSNSMCWGKDQC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTD-ERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
: : ....::: : .. ...: :.: . .::::::: : . .:::.:::::..::
NP_001 PYSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTP---APTLQRDFTAAFPRMLTTRGHGPAETQT-LGSLPDINL
.:: :.:..: .. :..: : : : :.. : :: : . . ::..
NP_001 FNDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 ---TQISTLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHS
:..:.:
NP_001 GTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSS
180 190 200 210 220 230
>>NP_612388 (OMIM: 610096) T-cell immunoglobulin and muc (378 aa)
initn: 276 init1: 199 opt: 333 Z-score: 364.7 bits: 75.9 E(85289): 1.4e-13
Smith-Waterman score: 333; 35.6% identity (60.3% similar) in 174 aa overlap (15-180:17-189)
10 20 30 40 50
pF1KE4 MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
: : .::. .:. . :::.:. . : .:::: :
NP_612 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSH-NSNSMCWGKDQC
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PVFECGNVVLRTD-ERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
: : ....::: : .. ...: :.: . .::::::: : . .:::.:::::..::
NP_612 PYSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 MNDEKFNLKLVIKPAKVTP---APTLQRDFTAAFPRMLTTRGHGPAETQT-LGSLPDINL
.:: :.:..: .. :..: : : : :.. : :: : . . ::..
NP_612 FNDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 ---TQISTLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHS
:..:.:
NP_612 GTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSS
180 190 200 210 220 230
301 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:29:10 2016 done: Sat Nov 5 23:29:11 2016
Total Scan time: 7.510 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]