Result of FASTA (ccds) for
pFN21AE4258
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4258, 981 aa
1>>>pF1KE4258 981 - 981 aa - 981 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7118+/-0.000977; mu= 14.1115+/- 0.059
mean_var=85.4743+/-16.870, 0's: 0 Z-trim(106.0): 25 B-trim: 0 in 0/50
Lambda= 0.138726
statistics sampled from 8746 (8762) to 8746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.269), width: 16
Scan time: 4.220
The best scores are: opt bits E(32554)
CCDS1332.1 TDRD5 gene_id:163589|Hs108|chr1 ( 981) 6521 1315.6 0
CCDS55663.1 TDRD5 gene_id:163589|Hs108|chr1 (1035) 4805 972.2 0
CCDS77385.1 TDRD15 gene_id:100129278|Hs108|chr2 (1934) 295 69.6 6.7e-11
CCDS41395.1 TDRKH gene_id:11022|Hs108|chr1 ( 516) 286 67.7 6.9e-11
CCDS41394.1 TDRKH gene_id:11022|Hs108|chr1 ( 561) 286 67.7 7.4e-11
CCDS7588.1 TDRD1 gene_id:56165|Hs108|chr10 (1189) 291 68.8 7.5e-11
>>CCDS1332.1 TDRD5 gene_id:163589|Hs108|chr1 (981 aa)
initn: 6521 init1: 6521 opt: 6521 Z-score: 7048.3 bits: 1315.6 E(32554): 0
Smith-Waterman score: 6521; 100.0% identity (100.0% similar) in 981 aa overlap (1-981:1-981)
10 20 30 40 50 60
pF1KE4 MSEQERIQECLRKEIRSLLISTKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSEQERIQECLRKEIRSLLISTKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PDVVRVCPGAGGTVILKAIPDESTKGIASLVAKQRSSHKLRNSMHKGRPSIYSGPRSHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PDVVRVCPGAGGTVILKAIPDESTKGIASLVAKQRSSHKLRNSMHKGRPSIYSGPRSHRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 VPYRGRVAPILPAVVKSELKDLLALSPVLLSDFEKAFAKRFGRSFQYMQYGFLSMFEVLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VPYRGRVAPILPAVVKSELKDLLALSPVLLSDFEKAFAKRFGRSFQYMQYGFLSMFEVLN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 AASDVISVEQTRAGSLLMLKKSVTEEKPRGCPAGKIFTQPFRMKQGSYSTGFPVAKPCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AASDVISVEQTRAGSLLMLKKSVTEEKPRGCPAGKIFTQPFRMKQGSYSTGFPVAKPCFS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 QPTSNMEPPKQIMSMEKTSKLNVVETSRLNHTEKLNQLENTFKSVIAQIGPGGTISSELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QPTSNMEPPKQIMSMEKTSKLNVVETSRLNHTEKLNQLENTFKSVIAQIGPGGTISSELK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 HKIKFVVSKFPEGLFISKLLGEYEVIFKEQLSPKKLGFLNVTELVGALSDILHVEFRKGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HKIKFVVSKFPEGLFISKLLGEYEVIFKEQLSPKKLGFLNVTELVGALSDILHVEFRKGH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 QDLLVFDADKKPLPPVQSDKKIEAKACVSSPPRNSLSTAAVKETVWNCPSKKQKEPQQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QDLLVFDADKKPLPPVQSDKKIEAKACVSSPPRNSLSTAAVKETVWNCPSKKQKEPQQKI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 CKKPNLVVKPLQLQVETNKSELNLAMANHDIPPDAVPNKKLCRLPPLDTSSLIGVFVEYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CKKPNLVVKPLQLQVETNKSELNLAMANHDIPPDAVPNKKLCRLPPLDTSSLIGVFVEYI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 ISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPGHLCCVRISEDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPGHLCCVRISEDK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 WWYRVIIHRVLEKQEVEVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WWYRVIIHRVLEKQEVEVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPVE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 EHWTSKAILQFQKLCGLKPLVGVVDEYVDGILNIFLCDTSSNEDVYFHHVLRTEGHAIVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EHWTSKAILQFQKLCGLKPLVGVVDEYVDGILNIFLCDTSSNEDVYFHHVLRTEGHAIVC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 RENISSKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISPQSKESELRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RENISSKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISPQSKESELRIL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE4 DEIPTGMPCLESVTIGDDIWDENWLPLQAKMGKGGDAASHLFTASLGGKNQYSSCKEMPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DEIPTGMPCLESVTIGDDIWDENWLPLQAKMGKGGDAASHLFTASLGGKNQYSSCKEMPQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE4 KDWCFSTPKDTWDDSWQPSGLVNGTKVEVHKPEVLGAQEKNTGTNRTQKQLDINGSSDSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KDWCFSTPKDTWDDSWQPSGLVNGTKVEVHKPEVLGAQEKNTGTNRTQKQLDINGSSDSS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE4 TLPKLEEFCTSLTQSEQSADGSQSEPNNSQTQPKQIQLSTAAPCSTTAVDDSAEKPSGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TLPKLEEFCTSLTQSEQSADGSQSEPNNSQTQPKQIQLSTAAPCSTTAVDDSAEKPSGSV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE4 ESSPEILKNEDFSSSRAITLYKDKRQESVDQLSLILSYECQISQKLYIPRSTATAALGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESSPEILKNEDFSSSRAITLYKDKRQESVDQLSLILSYECQISQKLYIPRSTATAALGAA
910 920 930 940 950 960
970 980
pF1KE4 ARLATSRSLLHWYPSVKRMEA
:::::::::::::::::::::
CCDS13 ARLATSRSLLHWYPSVKRMEA
970 980
>>CCDS55663.1 TDRD5 gene_id:163589|Hs108|chr1 (1035 aa)
initn: 4790 init1: 4790 opt: 4805 Z-score: 5191.8 bits: 972.2 E(32554): 0
Smith-Waterman score: 6260; 94.7% identity (94.7% similar) in 1013 aa overlap (1-959:1-1013)
10 20 30 40 50 60
pF1KE4 MSEQERIQECLRKEIRSLLISTKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSEQERIQECLRKEIRSLLISTKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PDVVRVCPGAGGTVILKAIPDESTKGIASLVAKQRSSHKLRNSMHKGRPSIYSGPRSHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PDVVRVCPGAGGTVILKAIPDESTKGIASLVAKQRSSHKLRNSMHKGRPSIYSGPRSHRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 VPYRGRVAPILPAVVKSELKDLLALSPVLLSDFEKAFAKRFGRSFQYMQYGFLSMFEVLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VPYRGRVAPILPAVVKSELKDLLALSPVLLSDFEKAFAKRFGRSFQYMQYGFLSMFEVLN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 AASDVISVEQTRAGSLLMLKKSVTEEKPRGCPAGKIFTQPFRMKQGSYSTGFPVAKPCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AASDVISVEQTRAGSLLMLKKSVTEEKPRGCPAGKIFTQPFRMKQGSYSTGFPVAKPCFS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 QPTSNMEPPKQIMSMEKTSKLNVVETSRLNHTEKLNQLENTFKSVIAQIGPGGTISSELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QPTSNMEPPKQIMSMEKTSKLNVVETSRLNHTEKLNQLENTFKSVIAQIGPGGTISSELK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 HKIKFVVSKFPEGLFISKLLGEYEVIFKEQLSPKKLGFLNVTELVGALSDILHVEFRKGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HKIKFVVSKFPEGLFISKLLGEYEVIFKEQLSPKKLGFLNVTELVGALSDILHVEFRKGH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 QDLLVFDADKKPLPPVQSDKKIEAKACVSSPPRNSLSTAAVKETVWNCPSKKQKEPQQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QDLLVFDADKKPLPPVQSDKKIEAKACVSSPPRNSLSTAAVKETVWNCPSKKQKEPQQKI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 CKKPNLVVKPLQLQVETNKSELNLAMANHDIPPDAVPNKKLCRLPPLDTSSLIGVFVEYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CKKPNLVVKPLQLQVETNKSELNLAMANHDIPPDAVPNKKLCRLPPLDTSSLIGVFVEYI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 ISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPGHLCCVRISEDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPGHLCCVRISEDK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 WWYRVIIHRVLEKQEVEVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WWYRVIIHRVLEKQEVEVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPVE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 EHWTSKAILQFQKLCGLKPLVGVVDEYVDGILNIFLCDTSSNEDVYFHHVLRTEGHAIVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EHWTSKAILQFQKLCGLKPLVGVVDEYVDGILNIFLCDTSSNEDVYFHHVLRTEGHAIVC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 RENISSKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISPQSKESELRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RENISSKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISPQSKESELRIL
670 680 690 700 710 720
pF1KE4 ------------------------------------------------------DEIPTG
::::::
CCDS55 QDINDEKSLSHLKSESKEPLKDSEFESLKTCNKSFEEDPKWSNPEPNDLKEENEDEIPTG
730 740 750 760 770 780
730 740 750 760 770 780
pF1KE4 MPCLESVTIGDDIWDENWLPLQAKMGKGGDAASHLFTASLGGKNQYSSCKEMPQKDWCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPCLESVTIGDDIWDENWLPLQAKMGKGGDAASHLFTASLGGKNQYSSCKEMPQKDWCFS
790 800 810 820 830 840
790 800 810 820 830 840
pF1KE4 TPKDTWDDSWQPSGLVNGTKVEVHKPEVLGAQEKNTGTNRTQKQLDINGSSDSSTLPKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TPKDTWDDSWQPSGLVNGTKVEVHKPEVLGAQEKNTGTNRTQKQLDINGSSDSSTLPKLE
850 860 870 880 890 900
850 860 870 880 890 900
pF1KE4 EFCTSLTQSEQSADGSQSEPNNSQTQPKQIQLSTAAPCSTTAVDDSAEKPSGSVESSPEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EFCTSLTQSEQSADGSQSEPNNSQTQPKQIQLSTAAPCSTTAVDDSAEKPSGSVESSPEI
910 920 930 940 950 960
910 920 930 940 950 960
pF1KE4 LKNEDFSSSRAITLYKDKRQESVDQLSLILSYECQISQKLYIPRSTATAALGAAARLATS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LKNEDFSSSRAITLYKDKRQESVDQLSLILSYECQISQKLYIPRSTATAALGAAARLATS
970 980 990 1000 1010 1020
970 980
pF1KE4 RSLLHWYPSVKRMEA
CCDS55 RSLLHWYPSVKRMEA
1030
>>CCDS77385.1 TDRD15 gene_id:100129278|Hs108|chr2 (1934 aa)
initn: 228 init1: 147 opt: 295 Z-score: 309.1 bits: 69.6 E(32554): 6.7e-11
Smith-Waterman score: 295; 25.2% identity (56.9% similar) in 325 aa overlap (398-705:400-712)
370 380 390 400 410 420
pF1KE4 ADKKPLPPVQSDKKIEAKACVSSPPRNSLSTAAVKETVWNCPSKKQKEPQQKICKKPNLV
: ..:.. : . : .: :
CCDS77 QLSIFKQALLGQVVYAHIDWFNKDECLYYVTLQTQESTVNSKCLLKTVGTQVLC--PMSD
370 380 390 400 410 420
430 440 450 460 470
pF1KE4 VKPLQLQVETNKSELN-LA----MANHDIPPDAVPNKKLCRLP-PLDTSSL-----IGVF
: .. ::. :..: .: :.: . :.. .: . .. :. : .. .:
CCDS77 SKISNILSETSVSDVNSFAVESFMGNIEWSIDSLNKKGILKVGFPIKTVQMEIEAAYIAF
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE4 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVM--PECFIQPGHLCCV
. :...::.:..: . : . ....: .. . : . .:.... :: :: .::.
CCDS77 IAYVLNPSNFWVR--TNDHRNEFQEIMKNINKFY-DLCENDEMILRKPE----PGLFCCA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE4 RISEDKWWYRVIIHRVLEKQEVEVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLA
: :.:. .::..: .. . ...:.. :.:: . ....: . .::: :. ::::
CCDS77 RYSKDRRFYRAVITEI-NGYKINVYFLDYGNTDSIPFFDVKILLPEFCELPALAMCCSLA
550 560 570 580 590
600 610 620 630 640 650
pF1KE4 WVRPVEEHWTSKAILQFQKLCGLKP-LVGVVDEYVDGI-LNIFLCDTSSNEDVYFHHVLR
. :::. ::. :: :.:: : :. :. . : .:: ..: : :: ..
CCDS77 HIFPVEDLWTKAAIDYFKKLVLNKAILLQVIAKKDDKYTVNIQSVEASENIDVI--SLML
600 610 620 630 640 650
660 670 680 690 700 710
pF1KE4 TEGHAIVCRENIS--SKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISP
:.: . .. :. :: . : . .. . . .. . : :....: ...
CCDS77 QAGYAEYFQVELEYFPKSVSEYSMLNSESKNKVNIKKVISALLEGPKSKKYHSNNLVENN
660 670 680 690 700 710
720 730 740 750 760 770
pF1KE4 QSKESELRILDEIPTGMPCLESVTIGDDIWDENWLPLQAKMGKGGDAASHLFTASLGGKN
CCDS77 LSLPKSLAVNISEFKNPFTLSVGPESSWPYKEYIFRPGTVLEVKCSCYYGPGDFSCQLQC
720 730 740 750 760 770
>>CCDS41395.1 TDRKH gene_id:11022|Hs108|chr1 (516 aa)
initn: 144 init1: 144 opt: 286 Z-score: 309.0 bits: 67.7 E(32554): 6.9e-11
Smith-Waterman score: 286; 29.9% identity (58.8% similar) in 221 aa overlap (455-664:241-454)
430 440 450 460 470 480
pF1KE4 NLVVKPLQLQVETNKSELNLAMANHDIPPDAVPNKKLCRLPPLDTSSLIGVFVEYIIS--
:.:. . ..: : : ..: .:
CCDS41 KGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSAS
220 230 240 250 260 270
490 500 510 520 530 540
pF1KE4 --PSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPGHLCCVRISEDK
:..:.:.: . : .: . .. :: . : :.. : : . : . . . .
CCDS41 EHPNHFWIQIVGSRSLQL-DKLVNEMTQHYENSVPEDLTV------HVGDIVAAPLPTNG
280 290 300 310 320
550 560 570 580 590 600
pF1KE4 WWYRVIIHRVLEKQEVEVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPVE
:::. . .::. ...... :::. : ..:: :. . .:: ::: :::: . :
CCDS41 SWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSG
330 340 350 360 370 380
610 620 630 640 650
pF1KE4 EHWTSKAILQFQKL--CG-LKPLVGVVDEYVD-GILN---IFLCDTSSNEDVYFHHVLRT
..: .:. .:..: :. ::::. .. ::. :: . :.: :::... . . :
CCDS41 DQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKLDIGLELVH
390 400 410 420 430 440
660 670 680 690 700 710
pF1KE4 EGHAIVCRENISSKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISPQSK
.:.:: :.:
CCDS41 KGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSCLSLSEAAS
450 460 470 480 490 500
>>CCDS41394.1 TDRKH gene_id:11022|Hs108|chr1 (561 aa)
initn: 144 init1: 144 opt: 286 Z-score: 308.4 bits: 67.7 E(32554): 7.4e-11
Smith-Waterman score: 286; 29.9% identity (58.8% similar) in 221 aa overlap (455-664:286-499)
430 440 450 460 470 480
pF1KE4 NLVVKPLQLQVETNKSELNLAMANHDIPPDAVPNKKLCRLPPLDTSSLIGVFVEYIIS--
:.:. . ..: : : ..: .:
CCDS41 KGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSAS
260 270 280 290 300 310
490 500 510 520 530 540
pF1KE4 --PSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPGHLCCVRISEDK
:..:.:.: . : .: . .. :: . : :.. : : . : . . . .
CCDS41 EHPNHFWIQIVGSRSLQL-DKLVNEMTQHYENSVPEDLTV------HVGDIVAAPLPTNG
320 330 340 350 360
550 560 570 580 590 600
pF1KE4 WWYRVIIHRVLEKQEVEVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPVE
:::. . .::. ...... :::. : ..:: :. . .:: ::: :::: . :
CCDS41 SWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSG
370 380 390 400 410 420
610 620 630 640 650
pF1KE4 EHWTSKAILQFQKL--CG-LKPLVGVVDEYVD-GILN---IFLCDTSSNEDVYFHHVLRT
..: .:. .:..: :. ::::. .. ::. :: . :.: :::... . . :
CCDS41 DQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKLDIGLELVH
430 440 450 460 470 480
660 670 680 690 700 710
pF1KE4 EGHAIVCRENISSKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISPQSK
.:.:: :.:
CCDS41 KGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSCLSLSEAAS
490 500 510 520 530 540
>>CCDS7588.1 TDRD1 gene_id:56165|Hs108|chr10 (1189 aa)
initn: 227 init1: 227 opt: 291 Z-score: 308.3 bits: 68.8 E(32554): 7.5e-11
Smith-Waterman score: 291; 24.9% identity (55.4% similar) in 325 aa overlap (424-728:659-963)
400 410 420 430 440 450
pF1KE4 NSLSTAAVKETVWNCPSKKQKEPQQKICKKPNLVVKPLQLQVETNKSELNLAMAN-HDIP
:.. :. . :.. .: ... . :.
CCDS75 KLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVK
630 640 650 660 670 680
460 470 480 490 500
pF1KE4 PDAVPNKKLCRLPPLD-------TSSLIGVFVEYIISPSQFYIRIYSRDSSELLEDMMIE
.:: .. ::. ... . : : : ::..:: .. ..:. . :.:.
CCDS75 ETSVPLGVEGKVNPLEWTWVELGVDQTVDVVVCVIYSPGEFYCHVLKEDALKKLNDLNKS
690 700 710 720 730 740
510 520 530 540 550 560
pF1KE4 M-RRCYSNQLVSDRYVMPECF-IQPGHLCCVRISEDKWWYRVIIHRVLEKQEVEVFYPDF
. ..: .. .:. : . :. ::. .. : :::......: . .:.: . :.
CCDS75 LAEHCQQK--------LPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDY
750 760 770 780 790 800
570 580 590 600 610 620
pF1KE4 GNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPVEEHWTSKAILQFQKLC--GLKPLV
::: : . ::... . .:: :.: :.:: .. ..::. .:: .:: .: :.: .
CCDS75 GNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQ-MCVAGIKLQA
810 820 830 840 850
630 640 650 660 670
pF1KE4 GVVDEYVDGILNIFLCDTSSN-----EDVYF--HHVLRTEG-HAIVCRENISSKGFSELN
::. .:: .. : : :. :: . : ::.. . : . . . .: ...
CCDS75 RVVEVTENGI-GVELTDLSTCYPRIISDVLIDEHLVLKSASPHKDLPNDRLVNKHELQVH
860 870 880 890 900 910
680 690 700 710 720 730
pF1KE4 PLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISPQSKESELRILDEIPTGMPCLESV
.: .:::. . . : . .. :::. .. .: :::
CCDS75 VQGLQATSSAEQWKTIELPVDKTIQANVLE---IISPN-------LFYALPKGMPENQEK
920 930 940 950 960
740 750 760 770 780 790
pF1KE4 TIGDDIWDENWLPLQAKMGKGGDAASHLFTASLGGKNQYSSCKEMPQKDWCFSTPKDTWD
CCDS75 LCMLTAELLEYCNAPKSRPPYRPRIGDACCAKYTSDDFWYRAVVLGTSDTDVEVLYADYG
970 980 990 1000 1010 1020
981 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:46:22 2016 done: Mon Nov 7 16:46:22 2016
Total Scan time: 4.220 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]